Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0632 ATGCAAAATCACTCTTTCTCCTACATATCCTCCTTTCATGGAAGTACTAGTAATAATGCATTCTTTGAAGCTGATGAAGTTGATGATGAAGCTTCCATTTCCCTCTCTCTTGGCCCTCCTGGCCAACACAACCCCAAACCTATATCTACCTTAAACCACTCTACCACTACTCTTTGCCAAGCCCAAAACCCTATTACCTGTGATGACCATAGTGGTATAACTGTTGCCTTACACATTGGTCTTCCTTCCTCAACAAAAAACATAAACCCAACTACAACAAAACCTGATTATTTGACTTCAACTCCATTGCAGGGTCAGTATTGGATCCCTTCTTCTGCTCAAATCCTCATTGGACCTACCCAGTTCTCTTGCTCAGTCTGTAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGGTCACAATACAGAAAAGGACCTGAATCATTGAGAGGGGTGAAACCAGCTTCTTCAATGCTAAGGTTACCATGTTATTGTTGTGCTGAGGGTTGCAAGAACAACATAGATCACCCACGGTCAAGGCCATTGAAGGATTTCAGGACCCTTCAAACACACTATAAGAGGAAACATGGTGCAAAGCCATTTGGGTGTAGAAAGTGTGGGAAGCCATTTGCTGTAAGAGGGGATTGGAGGACACATGAGAAGAATTGTGGAAAGCTTTGGTTCTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGACCATGTTCGTGCCTTTGGTGATGGACATGCTCCTCATACGGTGGAAGGTTGTGGTGATCAAAATTTGATGGGAGATGAAGATGAAGATGATGATGAGGAGTTTGATGAAGATGATAGCAACAATGAAAATGAGACTGCACCTTTGTCTGTTGTCTCTGATGGAGAAAGAGAAAGTGAGAGTAAAGGGAGGTGCGAGAAGATGCAGACAAACAGAGAAATGAAAGCCAAGGTTCTTGCATTTAATGCAAGAACTAGAGTCTAG 1008 0.4246 MQNHSFSYISSFHGSTSNNAFFEADEVDDEASISLSLGPPGQHNPKPISTLNHSTTTLCQAQNPITCDDHSGITVALHIGLPSSTKNINPTTTKPDYLTSTPLQGQYWIPSSAQILIGPTQFSCSVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVEGCGDQNLMGDEDEDDDEEFDEDDSNNENETAPLSVVSDGERESESKGRCEKMQTNREMKAKVLAFNARTRV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0632 335 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Lal22g0632 335 SUPERFAMILY beta-beta-alpha zinc fingers 115 144 IPR036236 -
Lal22g0632 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Lal22g0632 335 MobiDBLite consensus disorder prediction 259 319 - -
Lal22g0632 335 PANTHER ZINC FINGER PROTEIN WIP2 4 294 IPR043584 GO:0003700|GO:0010468
Lal22g0632 335 MobiDBLite consensus disorder prediction 303 319 - -
Lal22g0632 335 MobiDBLite consensus disorder prediction 270 291 - -
Lal22g0632 335 Gene3D Classic Zinc Finger 109 230 - -
Lal22g0632 335 PANTHER ZINC FINGER PROTEIN WIP6 4 294 - -
Lal22g0632 335 SUPERFAMILY beta-beta-alpha zinc fingers 190 227 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0632 Lal-Chr22 4450240 4452203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0632 29 263 C2H2 Transcription Factor Family AT1G13290 74.895 3.95e-124 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal22g0632 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0632 22 4450240 4452203 Lal22g0632 22 4450240 4452203 ECH
Lal22g0632 22 4450240 4452203 Lal6g0703 6 4629412 4631223 LSH