Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0627 ATGGAACCTTTCTTTCACCTCTTCCCTTTAATCCTCTTTCTCTTATCCTCTCCTCTATTAACACATTCTCGCACCACACCCCTTAGACCCAAAACGACACTACTCGATGTCGCTTCATCCATTCAAAAAACACAAAACATCTTCGCCTTTAACCAACAACTTCATTCTTCTTCTTCCTTCTATTCAAACTCACTCTCTACACTTTCACTTCAACTACATTCTCGAGCTTCCCTTCAAAACCCATCACACTTCGATTACAAAGAACTCACCCTATCTCGACTCGCCCGTGACTCAGCCCGAGTCAAATCCCTACAAACTCGCTTAGATCTCTCCCTAAAACGCGTTTCCCAAACCGATGCACAACAACAAGACTCCTTTATCTTCAACGAAATCCAAGGTCCCATCGTTTCAGGAACGAGTCAGGGAAGCGGTGAGTACTTCCTCCGAGTTGGAATCGGTAACCCGCCGAGTCAATCCTATATGGTTCTTGACACTGGTAGTGACGTCAGCTGGATCCAGTGCGAACCTTGCTCCGAATGTTATCAACAAACTGATCCTATATTTGACCCAAGTTCTTCTTCTTCCTACGCGCCAATCACCTGCGACGCGCCTCAGTGCAAATCACTGGATCTCTCTGAGTGCCGTAACGGAACTTGCCTCTATGAAGTTTCTTACGGCGACGGTTCCTACACTGTTGGCGAATTCGCAACGGAAACCGTTACTCTCGGTGCTGCTTCTGTTGAAAATGTTGCTATTGGATGTGGTCATACAAATGAAGGTTTATTCGTCGGTGCTGCTGGTTTGCTTGGTTTAGGTGGCGGTTCGTTGTCCTTTCCGGCTCAGCTTAATGCGACGTCGTTTTCGTATTGTCTTGTTGATCGTGACTCTGATTCTGCTTCTACGCTCGAATTTAACTCTCCGTTGCCGCGTAACGCCGTCACCGCGCCGTTACAGCGGAGCAAGGAGATGAAAACGTTTTATTATGTCGGATTGGCGGGAATCAGTGTTGGCGGTGAGATGCTTCCGATTCCGGAGACTAGTTTTCAGGTGGATGCTTCCGGTGGAAGAGGGATTATTGTAGATTCCGGCACGGCGGTGACGCGGTTGCAGGGTGAGGTTTATGATTCGCTTCGGGATGCTTTTATAAGAGAGACTAGAGAGTTGAAGAAGGTGAATGGTGTGTCGTTGTTTGACACTTGCTATGATTTGTCGTCGAAGACGAGCGTGGAGGTTCCGACGGTGTCGTTTCACTTTGCAGAGGGGAAGGAGTTACCGTTACCGGCGAAGAATTACCTGATACCGGTTGATTCGGTGGGGACGTTTTGTTTTGCGTTCGCGCCAACGACTTCTTCGTTGTCGATTATTGGGAACGTTCAGCAGCAAGGGACACGTGTCAGTTTCGATCTTGATAACGGCGTCGTTGGATTCTCTGCCAATAGCTGCTAG 1446 0.4813 MEPFFHLFPLILFLLSSPLLTHSRTTPLRPKTTLLDVASSIQKTQNIFAFNQQLHSSSSFYSNSLSTLSLQLHSRASLQNPSHFDYKELTLSRLARDSARVKSLQTRLDLSLKRVSQTDAQQQDSFIFNEIQGPIVSGTSQGSGEYFLRVGIGNPPSQSYMVLDTGSDVSWIQCEPCSECYQQTDPIFDPSSSSSYAPITCDAPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFATETVTLGAASVENVAIGCGHTNEGLFVGAAGLLGLGGGSLSFPAQLNATSFSYCLVDRDSDSASTLEFNSPLPRNAVTAPLQRSKEMKTFYYVGLAGISVGGEMLPIPETSFQVDASGGRGIIVDSGTAVTRLQGEVYDSLRDAFIRETRELKKVNGVSLFDTCYDLSSKTSVEVPTVSFHFAEGKELPLPAKNYLIPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVSFDLDNGVVGFSANSC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0627 481 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 161 172 IPR001969 GO:0004190|GO:0006508
Lal22g0627 481 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 22 481 - -
Lal22g0627 481 SUPERFAMILY Acid proteases 139 481 IPR021109 -
Lal22g0627 481 Pfam Xylanase inhibitor C-terminal 327 477 IPR032799 -
Lal22g0627 481 Pfam Xylanase inhibitor N-terminal 146 304 IPR032861 -
Lal22g0627 481 Gene3D Acid Proteases 301 481 IPR021109 -
Lal22g0627 481 ProSiteProfiles Peptidase family A1 domain profile. 146 477 IPR033121 -
Lal22g0627 481 PANTHER ASPARTYL PROTEASES 22 481 IPR001461 GO:0004190|GO:0006508
Lal22g0627 481 Gene3D Acid Proteases 118 300 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0627 Lal-Chr22 4403653 4405098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0627 136 481 Miscellaneous Gene Families AT1G77480 26.804 5.04e-24 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0627 22 4403653 4405098 Lal22g0627 22 4403653 4405098 ECH