LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal22g0594	ATGGCTTCGGAGGATGTGAAGAGCGGCGAATCTGCTGTTACGAAGATCGTGAATCTGGCGGAGGAAGCGAAGCTCGCGAGAGAAGGCGTTGTTAACAAGGCTCCTAGCTATGCCGTCGCCACCATCTGCAAGTCTCTCGTCGCCGGTGGAGTCGCAGGAGGAGTATCACGAACAGCAGTTGCTCCACTGGAACGGTTGAAAATTTTGCTTCAGGTCCAGAATCCTCATAACATAAAATACAACGGAACAATCCAAGGCCTTAAATATATATGGAGAACTGAAGGGTTCCGTGGACTGTTCAAAGGGAATGGTACTAATTGTGCTCGCATTGTCCCAAATTCTGCAGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGTATCTGTATCAACAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTGTTTTACGTCTTGGAGCTGGAGCATGTGCAGGAATAATTGCTATGTCTGCAACTTATCCAATGGATATGGTTCGAGGAAGAATAACTGTGCAGACTGAGAATTCTCCTTATCAGTACAGAGGAATGTTCCATGCTCTGTCTACTGTGCTTAGGGAAGAAGGACCCCGTGCTCTATATAAGGGCTGGCTTCCTTCAGTAATTGGAGTTGTTCCATATGTGGGTCTCAACTTTGCTGTCTATGAGTCTTTAAAAGATTGGTTAATTAAATCCAAACCATTTGGTCTAGTTAATGATTCTTCTGAGTTGAGTGTGACAACTCGCCTAGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGGGGGTTGGAACCATGCTGCTTCTGTTCTAACTGGTGATGGAAGAGGCAAAGTCCCACTTGAATACACTGGAATGGTTGATGCATTTAGGAAAACTGTTCGGCATGAAGGATTTGGTGCATTGTACAAGGGTCTGGTTCCCAATTCTGTGAAGGTTGTCCCATCCATAGCACTTGCATTTGTAACATATGAGGTGGTGAAGGACGTTTTAGGAGTGGAGATCAGGATATCAGACTAA	1074	0.4534	MASEDVKSGESAVTKIVNLAEEAKLAREGVVNKAPSYAVATICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYLYQQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTENSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLIKSKPFGLVNDSSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMGGWNHAASVLTGDGRGKVPLEYTGMVDAFRKTVRHEGFGALYKGLVPNSVKVVPSIALAFVTYEVVKDVLGVEIRISD	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal22g0594	357	PANTHER	BNAA09G39370D PROTEIN	1	352	-	-
	Lal22g0594	357	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	40	127	IPR018108	-
	Lal22g0594	357	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	247	348	IPR018108	-
	Lal22g0594	357	PRINTS	Mitochondrial carrier protein signature	45	58	IPR002067	GO:0055085
	Lal22g0594	357	PRINTS	Mitochondrial carrier protein signature	58	72	IPR002067	GO:0055085
	Lal22g0594	357	PRINTS	Mitochondrial carrier protein signature	102	122	IPR002067	GO:0055085
	Lal22g0594	357	PRINTS	Mitochondrial carrier protein signature	158	176	IPR002067	GO:0055085
	Lal22g0594	357	PRINTS	Mitochondrial carrier protein signature	204	222	IPR002067	GO:0055085
	Lal22g0594	357	PRINTS	Mitochondrial carrier protein signature	256	278	IPR002067	GO:0055085
	Lal22g0594	357	SUPERFAMILY	Mitochondrial carrier	42	344	IPR023395	-
	Lal22g0594	357	Gene3D	Mitochondrial carrier domain	38	351	IPR023395	-
	Lal22g0594	357	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	143	231	IPR018108	-
	Lal22g0594	357	Pfam	Mitochondrial carrier protein	143	235	IPR018108	-
	Lal22g0594	357	Pfam	Mitochondrial carrier protein	42	126	IPR018108	-
	Lal22g0594	357	Pfam	Mitochondrial carrier protein	246	349	IPR018108	-
	Lal22g0594	357	PANTHER	SOLUTE CARRIER FAMILY 25	1	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal22g0594	Lal-Chr22	4187165	4192363	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal22g0594	46	352	EF-hand Containing Proteins	AT5G51050	37.987	5.53e-65	212

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal22g0594	22	4187165	4192363	Lal22g0594	22	4187165	4192363	ECH
	Lal22g0594	22	4187165	4192363	Lal6g0674	6	4414987	4419796	LSH
	Lal22g0594	22	4187165	4192363	Lal18g0279	18	2281234	2285673	LSH
	Lal18g0279	18	2281234	2285673	Lal22g0594	22	4187165	4192363	PCT
	Lal22g0594	22	4187165	4192363	Lal18g0279	18	2281234	2285673	PCT