Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0568 ATGGATTCATGTTCAAGGCCAGTTATAGAGAAGAAAGCTCCTAGGCCACCACAAGAACCAGTGAATTGTCCAAGGTGCAGTTCAACCAACACCAAGTTCTGTTACTACAACAACTATAGCCTCACACAACCAAGATACTTTTGTAAGACATGTAGAAGGTATTGGACAGAAGGTGGGTCTCTCAGAAATGTCCCTGTTGGAGGTGGTTCTAGAAAGAACAAGAAAATCACTACAGCCTCAACCTCAGCATCATCAAAGGTTATAGATCCAGACCTAAACCCACCAAGTCTCTCAATATCATCATCAGCTATAATTTCTAACTCCCAAAACCCTAAAATAATGCAAGGATCAGGTCATGATCTTAACCTTGCTTTCCCTTCTGTGGATCACAATTACCATGGCATGTCTTCGTATGTTGACATGCCTAATGGTGACAACACCAATCATCATCATCACCAAAACTCTTCTGCTCCATCTTCTCTTTCTGCTTTGGAGCTGTTAAGATCTGGCATGGCTTCTAGGGGTTTGAATCCTTATGCTCCTAACTCCTTGATGCCAAATTCAAATTCTCTTTACCCTCCATCTGGGTTTCCCATGCAAGAAGTTAAAGCGAATCTTGGCTTTTCAGTTGATCATGGGGTTGGAAATAGATCATACCATGATCAGGTTCAAGAGAATGGTGGGAGACTTTTGTTTCCTTTTGGAGATGTCAAGCAACAGTTTTCTCATCATGCTGGTAGTGCTGAAGTGGAACATAATAATAAGGAACATGGAAATTCTTCAAGTACTGGATATTGGAGTGGAATGATTGGAGAAGGGTCATGGTAA 828 0.4143 MDSCSRPVIEKKAPRPPQEPVNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKITTASTSASSKVIDPDLNPPSLSISSSAIISNSQNPKIMQGSGHDLNLAFPSVDHNYHGMSSYVDMPNGDNTNHHHHQNSSAPSSLSALELLRSGMASRGLNPYAPNSLMPNSNSLYPPSGFPMQEVKANLGFSVDHGVGNRSYHDQVQENGGRLLFPFGDVKQQFSHHAGSAEVEHNNKEHGNSSSTGYWSGMIGEGSW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0568 275 MobiDBLite consensus disorder prediction 141 160 - -
Lal22g0568 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 270 IPR045174 GO:0003700|GO:0006355
Lal22g0568 275 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Lal22g0568 275 MobiDBLite consensus disorder prediction 1 21 - -
Lal22g0568 275 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Lal22g0568 275 MobiDBLite consensus disorder prediction 65 86 - -
Lal22g0568 275 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Lal22g0568 275 MobiDBLite consensus disorder prediction 242 275 - -
Lal22g0568 275 PANTHER DOF ZINC FINGER PROTEIN DOF3.7 15 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0568 Lal-Chr22 3873537 3874364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0568 8 275 C2C2-Dof Transcription Factor Family AT3G61850 47.569 1.53e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal22g0568 zf-Dof 5.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0568 - - gmx:778110 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0568 22 3873537 3874364 Lal17g0583 17 4163760 4166730 ECH
Lal22g0568 22 3873537 3874364 Lal4g0508 4 3683890 3685172 ECH
Lal22g0568 22 3873537 3874364 Lal21g0577 21 4294142 4296451 ECH
Lal22g0568 22 3873537 3874364 Lal22g0568 22 3873537 3874364 ECH
Lal22g0568 22 3873537 3874364 Lal18g1044 18 13449850 13451997 LSH