Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0694 ATGGATCGAAGAGATGGGAAAAGATCAAGTCCTATGGAAGAAGCAGAAAAGGAAGAGAACTACGAGTTCCCAATCTATTCAGAAAGGTCACAGCAAGACATATCAGTCATGGTTTCAGCACTTACTCAAGTCATTGGTGGCACCAGCAATAGTGACCCAATTCAGCTACTTCAATACCCTTTAACTTCTGGAACCCAGAATCAACAATCCCAACAACCACAAGAAGATCAAGGGTTCTTAATTTCTTCTCGTGAACTATTATCTTTGCTTGCAAGGCTGCATAAAGATTTGGCTCATAATGGAATCAAAATCAAAATGTTCTACGGCCAAACTGAAGAAAACTATATAAGTAATATAAACCCAAGAAACATGAGACTAATTGGTGTAAGTGTTGATTCATGTGAAGGGAACATGAGAAGAATTCACTATAGAGGTGTGAGACAAAGGCCATGGGGGAAATGGGCTGCAGAGATTAGAGATCCAAAGAAAGCAGCAAGGGTATGGCTTGGAACATTTGACACTGCTGAAGCTGCTGCACTTGCTTATGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCAAAACTCAACTTCCCTGAAAGGGTTCAACCACCAATATATCAAGTTCCTCTTCCTCCTCCTCCACACTTTTCTCAAGAAATATATTCAAGTAATCCCTTCCAATATGCACCACTTATGGGAAGTGATGGGAGTAGTAATCACATTAATAACTTCAATTATGAAATGAATGGTTTCTATGGGAATCAGCCATTTACATCTGCATCATCTTCTGGAGTAACTCAGCAGGAACAAGAGTTCATGAGGTTTTCCATGCAATATGGGGGTTCTTCTTCGTATGATCAACCTCCTAGGAATTGGATGGATGACAATGATGGAAGACATTGA 906 0.4018 MDRRDGKRSSPMEEAEKEENYEFPIYSERSQQDISVMVSALTQVIGGTSNSDPIQLLQYPLTSGTQNQQSQQPQEDQGFLISSRELLSLLARLHKDLAHNGIKIKMFYGQTEENYISNINPRNMRLIGVSVDSCEGNMRRIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQPPIYQVPLPPPPHFSQEIYSSNPFQYAPLMGSDGSSNHINNFNYEMNGFYGNQPFTSASSSGVTQQEQEFMRFSMQYGGSSSYDQPPRNWMDDNDGRH 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0694 301 MobiDBLite consensus disorder prediction 1 24 - -
Lal21g0694 301 MobiDBLite consensus disorder prediction 279 301 - -
Lal21g0694 301 CDD AP2 142 200 IPR001471 GO:0003700|GO:0006355
Lal21g0694 301 SUPERFAMILY DNA-binding domain 142 200 IPR016177 GO:0003677
Lal21g0694 301 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Lal21g0694 301 PRINTS Ethylene responsive element binding protein signature 165 181 IPR001471 GO:0003700|GO:0006355
Lal21g0694 301 SMART rav1_2 142 205 IPR001471 GO:0003700|GO:0006355
Lal21g0694 301 PANTHER DNA-BINDING DOMAIN 130 236 IPR044808 GO:0003700|GO:0009873
Lal21g0694 301 PANTHER DNA-BINDING DOMAIN 8 78 IPR044808 GO:0003700|GO:0009873
Lal21g0694 301 MobiDBLite consensus disorder prediction 1 26 - -
Lal21g0694 301 Gene3D AP2/ERF domain 142 201 IPR036955 GO:0003700|GO:0006355
Lal21g0694 301 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 130 236 - -
Lal21g0694 301 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 78 - -
Lal21g0694 301 Pfam AP2 domain 142 191 IPR001471 GO:0003700|GO:0006355
Lal21g0694 301 ProSiteProfiles AP2/ERF domain profile. 142 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0694 Lal-Chr21 5496544 5497748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0694 23 203 AP2-EREBP Transcription Factor Family AT5G61890 50.276 2.99e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal21g0694 AP2 3.7e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal4g0680 4 5321613 5323687 Lal21g0694 21 5496544 5497748 ECH
Lal12g1301 12 15962022 15964578 Lal21g0694 21 5496544 5497748 ECH
Lal6g1644 6 19205330 19207783 Lal21g0694 21 5496544 5497748 ECH
Lal21g0694 21 5496544 5497748 Lal21g0694 21 5496544 5497748 ECH
Lal21g0694 21 5496544 5497748 Lal4g0680 4 5321613 5323687 LSH
Lal19g0997 19 13842021 13843395 Lal21g0694 21 5496544 5497748 PCT
Lal21g0694 21 5496544 5497748 Lal19g0997 19 13842021 13843395 PCT