Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0517 ATGTCAAATCAAAAACTCATTTCACACACCACCTTGATCCTCTTCCTTTCACTGTTTCTTCTCATCAATGTAGCTCATGTAGCCTCAAAATCCACCATAGAACCATGCACAAACTCAGACTCATGCAATGCACTTCTTGGCTACACTCTCTACACTGACCTTAAAGTCTCTGAGGTAGCTTCCCTTTTCCTAATAGACCCTATTTCTCTACTAACAGCCAATTCCATAGACATATCTTACCCTGATGTTGAACACCACATTCTCCCTTCAAAACTATTCATCAAGATCCCTATTTCATGCTCCTGTGTGGATGGCATTCGTAAATCAGTGTCCACACAATACAAGACTAGGCCTTCGGATAGTCTTTCGTCGATTGCCGATTCGGTTTATGGAGGTCTTGTATCTGCTGATCAGCTCAGGGAGGCTAATTCTATAACTGACCCTTCTGTCCTTGATGTTGGCCAGAACCTTGTTGTGCCTTTGCCTTGTACTTGCTTCAATGGCACTGATAATTCTTTGCCTGCAATTTATTTGTCATATGTGGTTAAACAAGTTGATAGTTTGGCTGCAATTGCGGCTAGGTATTTCACAACTCTTACTGATTTGATGAATGTCAATGCCTTGGGAAGCACTGCTATTGATGATGGTGATATTCTTGCTATTCCTATACCAGCTTGCGCTTCAGATTTTCCAAGATATGCCTCTGATTACAGTTTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCAGGTCACTGTGTGCAGTGTAGTTGTGGACCACGAAACCTGAAATTGTATTGCATGCCATCTTCTCTGGCTGCTTCATGTTCCAGCATGCAATGTAAAAACAGCAATCTTATGATTGGGAATGTTACAGTGCAACAGACTGGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGTATTGCTAATGGCACCATAATAACGACGTTGTCCCCGTCTCTTCAGCCTCGATGTCCAGGACGACAAGAATTCCCGGATTTTATAATCCCGCCTACAACTGTTACGAGCGAATCAATGTTTGCACCAGCACCAGCACCAGAGTCACATGGAAATGGTCTAACAACACCGATATCTTCGGTGGTACCTTCAACGGGGCCACTTCCCGGATTCTCACCCACAAACGGCCCTATTAGTGGGATAGCGGCTGGGGCCTCTGCTGCTTGCTCCTTGGTGAATCCATTTCCTGCCACTTTGACATCTGCACTTTTGTTATTACTTGTCAAGTTGATGCTCCCTGAAGCATTGTAA 1275 0.4384 MSNQKLISHTTLILFLSLFLLINVAHVASKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFLIDPISLLTANSIDISYPDVEHHILPSKLFIKIPISCSCVDGIRKSVSTQYKTRPSDSLSSIADSVYGGLVSADQLREANSITDPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVKQVDSLAAIAARYFTTLTDLMNVNALGSTAIDDGDILAIPIPACASDFPRYASDYSLLVPNGSYAITAGHCVQCSCGPRNLKLYCMPSSLAASCSSMQCKNSNLMIGNVTVQQTGGGCNVTSCNYDGIANGTIITTLSPSLQPRCPGRQEFPDFIIPPTTVTSESMFAPAPAPESHGNGLTTPISSVVPSTGPLPGFSPTNGPISGIAAGASAACSLVNPFPATLTSALLLLLVKLMLPEAL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0517 424 Pfam LysM domain 114 160 IPR018392 -
Lal21g0517 424 Pfam LysM domain 180 222 IPR018392 -
Lal21g0517 424 Gene3D LysM domain 168 229 IPR036779 -
Lal21g0517 424 CDD LysM 112 159 IPR018392 -
Lal21g0517 424 ProSiteProfiles LysM domain profile. 112 159 IPR018392 -
Lal21g0517 424 CDD LysM 179 221 IPR018392 -
Lal21g0517 424 SUPERFAMILY LysM domain 178 223 IPR036779 -
Lal21g0517 424 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Lal21g0517 424 SMART LysM_2 179 222 IPR018392 -
Lal21g0517 424 SMART LysM_2 113 160 IPR018392 -
Lal21g0517 424 Gene3D LysM domain 106 167 IPR036779 -
Lal21g0517 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 20 391 - -
Lal21g0517 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 20 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0517 Lal-Chr21 3732808 3736518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0517 4 398 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 66.080 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0517 - - gmx:100777292 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0517 21 3732808 3736518 Lal21g0517 21 3732808 3736518 ECH
Lal17g0466 17 3208828 3211829 Lal21g0517 21 3732808 3736518 LSH
Lal21g0517 21 3732808 3736518 Lal4g0646 4 4840204 4842609 LSH