Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0238 ATGTTGTGTGCTTGCTCCGGTGAGCAACACAAATTTGAAGAGGCGCCACAGTCGCCGGAATCTCTAGCGACTAGGGATTTCTCTGCAAGTGGACTTTCTTCCAGGACTGGGGATTGGGAATCTAAATTGGATGAAGCACAAGTTGAAGAAGCTGAATCTACTTTAAAAGAAGCTCTTTCCTTAAATTATGAGGAAGCTAGAGCTTTGCTGGGGAGGCTTGAATATCAACAAGGGAACTTTGAGGCTGCCCTTCAAGTATTTCAAGGCATAGACATCAAGGGTTTGATCCCAAAGATGATCAGGGCGATTTCTGAAAGAACCAAGCAAAATAAACCACGTTCCAAGACGGATATTGTTGTGATTCCTAATGTGATGTCACTGCATTCAGTAAGCTTGCTTTCAGAGGCAGTTCTGCTTAAAGCGAAATCATTAGAGGGGCTTGGGAGATACACTGAGAGTGCAAAGGAGTGCAGAATAATTCTGGATATCGTTGGATCAGCCTTTCCTAATGGAATGCCCAAGGGTATCGGTGAAGATTGTAAATTGCAAGAAATGTGTCACAGAGCATTGGAGTTGCTTCCAAACCTATGGATCAAGGCAGGCTTTCTAGATGAAGCTGTCACTGCATATCGCCGCGCACTGGTCAAGCCATGGAATTTGGAACAACCGAGGTTGGCTGCTTTGCAGAAAGATTTAGCTACAACGCTTCTCTATGCAGGTGTTGAAGTGGGTCCACCCTCTCTATTGCAAGTGTCGGGTCCAACCTTAAAGAGTAATGTTGAAGAATCAATACTTTTGCTATTAATACTGATGAGCAAGATGGCAATTCAGGAAATAGACTGGGATGCTGAAGTAATGGATCATCTTACATTTGCACTTTCGGTTACTGGGATGTTTGAGACATTGGCAGATCGTGTAGAGCAGATCCTTCCAGGTATATATGATCGAGCTGAGAGGTGGTACTTTCTTGCTTTGTGTTATAGTGCAGCGGGACACAATGAAGCAGCATTGAACCTTTTGAGGAAGGCTTGTGGTAGTTCTGAAGGAACACATGGACCCCATTTTCCTTCACTCTTGTTTGGAGCAAAACTGTGTTCCCAACATCCCAGCTATGCTCATGAAGGCATTAAATTTTCACGTGAAGTTATTGATCTAGCCAAGAATCAAAATGAGCATTTTTTGGGTGAAGGACACAAATTTCTTGGTATTTGCTATGGGGCCGCAGCTAGACTTTCTGCACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTTTCTAAACCGGGCTGCTGTAAATGGAAATGGTGACCCAGAAGTGATATTCAGCCTTGGGCTGGAAAATGCAATTCAAAGGAATTTGGACGCAGCTTATGACAACATAATGATTTACTCAGATGTGACCATTGGCAGTTTTGCAAGAGGTTGGCAGTTGTTAGCACTCATAGTATCTGCACAGCAGCGGTTTAAGGACGCTGAAACAATAGTTGATTTTGCATTAGATGAGTCTGGGCGGATGGATCAGTTAGAACTTCTAAGATTGAAAGCGGTGCTCCAAATTTCTCAGCAGCAACCCAAACAAGCAATAGAAACCTACAGAATCTTGTTAGCACTAATTCAAGCAAAAAGGGAGCTTTGGCTTCAGGATGAGAACGTTGATCAAGCAAAAGAATTCAAGCATGAGGTATTAACTGAAAGAAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTACGGAGATATCGGTTCATTACTTGATGCAAAAGCTTGTGTTAACAAAGCCCAGTTTATAGAATTTTTCTCTCCAAGAAGTTGGCATATTACAGGGATGTTGTTTGAAAATCGATCATTATACAAAGAGGCCCTTGTGTCTTTTTCAGTCTCCTTATCAATAGAACCTGATTACATTCCCAGTATCATTTCAACTGCAGAATTGTTGCTGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGCTTTTTAATGAATGCTTTGCGATTAGAACCCACAAATCATGATGCATGGTTCAACCTAGGATTGCTTTCAAAAAGGGAAGGTTCATTGCAACAGGCAGCAGATTTCTTTCAAGCTGCATATGAACTAAAGCTTTCAGCTCCAGTGCAAAAAATTGAGTAA 2148 0.4195 MLCACSGEQHKFEEAPQSPESLATRDFSASGLSSRTGDWESKLDEAQVEEAESTLKEALSLNYEEARALLGRLEYQQGNFEAALQVFQGIDIKGLIPKMIRAISERTKQNKPRSKTDIVVIPNVMSLHSVSLLSEAVLLKAKSLEGLGRYTESAKECRIILDIVGSAFPNGMPKGIGEDCKLQEMCHRALELLPNLWIKAGFLDEAVTAYRRALVKPWNLEQPRLAALQKDLATTLLYAGVEVGPPSLLQVSGPTLKSNVEESILLLLILMSKMAIQEIDWDAEVMDHLTFALSVTGMFETLADRVEQILPGIYDRAERWYFLALCYSAAGHNEAALNLLRKACGSSEGTHGPHFPSLLFGAKLCSQHPSYAHEGIKFSREVIDLAKNQNEHFLGEGHKFLGICYGAAARLSALDSERSIFQRESLDFLNRAAVNGNGDPEVIFSLGLENAIQRNLDAAYDNIMIYSDVTIGSFARGWQLLALIVSAQQRFKDAETIVDFALDESGRMDQLELLRLKAVLQISQQQPKQAIETYRILLALIQAKRELWLQDENVDQAKEFKHEVLTERKLEMEAWQDLATIYGDIGSLLDAKACVNKAQFIEFFSPRSWHITGMLFENRSLYKEALVSFSVSLSIEPDYIPSIISTAELLLKLGMQSLPIARSFLMNALRLEPTNHDAWFNLGLLSKREGSLQQAADFFQAAYELKLSAPVQKIE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0238 715 SUPERFAMILY TPR-like 424 598 IPR011990 GO:0005515
Lal21g0238 715 Pfam Tetratricopeptide repeat 667 704 - -
Lal21g0238 715 Pfam Tetratricopeptide repeat 44 88 - -
Lal21g0238 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Lal21g0238 715 SMART tpr_5 475 508 IPR019734 GO:0005515
Lal21g0238 715 SMART tpr_5 511 544 IPR019734 GO:0005515
Lal21g0238 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Lal21g0238 715 SMART tpr_5 134 167 IPR019734 GO:0005515
Lal21g0238 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Lal21g0238 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Lal21g0238 715 PANTHER PROTEIN NPG1 1 714 IPR043376 -
Lal21g0238 715 Coils Coil 56 76 - -
Lal21g0238 715 SUPERFAMILY TPR-like 46 342 IPR011990 GO:0005515
Lal21g0238 715 Pfam Tetratricopeptide repeat 317 345 IPR019734 GO:0005515
Lal21g0238 715 Gene3D Tetratricopeptide repeat domain 544 708 IPR011990 GO:0005515
Lal21g0238 715 SUPERFAMILY TPR-like 573 706 IPR011990 GO:0005515
Lal21g0238 715 PANTHER PROTEIN NPGR1 1 714 - -
Lal21g0238 715 Gene3D Tetratricopeptide repeat domain 16 242 IPR011990 GO:0005515
Lal21g0238 715 Gene3D Tetratricopeptide repeat domain 257 543 IPR011990 GO:0005515
Lal21g0238 715 MobiDBLite consensus disorder prediction 5 40 - -
Lal21g0238 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Lal21g0238 715 MobiDBLite consensus disorder prediction 21 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0238 Lal-Chr21 1577879 1581740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0238 1 712 Calmodulin-binding Proteins AT1G27460 57.821 0.0 835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0238 21 1577879 1581740 Lal21g0238 21 1577879 1581740 ECH
Lal8g0677 8 4780667 4788657 Lal21g0238 21 1577879 1581740 PCT
Lal21g0238 21 1577879 1581740 Lal8g0677 8 4780667 4788657 PCT