Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0234 ATGGCAAGAAGCTTAAGCGAATTAAGCATCAGCGACAATTCCTCTTCCGCTTTCAGCGATTGCAATAGCGACAGATCTGGCGAATTCCCCACGCCTTCTTCCCAATCACGACGCCTCTTCATCGCTTGCGCCGCCGACGATTTCATTCCTCAACTCATCTCCGATCTCAATTCTTCTTCCATCCATCACCAAAAACAAGCAGCTATGGAAATCAGATTACTCGCCAAGAACAAACCAGAAAATCGCCTCAAAATCGCTGAAGCCGGCGCAATTAATCCCTTAATCTCTCTCCTATCTTCACCCGATCTTCAGCTCCAAGAATATGGAGTCACAGCGGTTCTTAATCTTTCTCTTTGTGACGAGAACAAAGAGCTTATTGCTTTATCAGGAGCTATTAAGCCTCTTGTTCGAGCTCTGAAATCAGGAACTCCAACCGCTAAAGAAAACTCCGCGTGCGCTTTGCTTCGGTTATCGCAGGTTGAAGAGAATAAACTTGCGATTGGAAAAGCGGGAGCGATTCCGTTACTGGTGAACCTTCTACAAAACGGAAGTTTCCGCGGGAAGAAGGACGCGTCGACGGCGATTTACTCATTGTGTTCGGTGAAAGAGAATAAGATGAGGGCGGTGAAAGCGGGGATTATGAAGGTTCTTGTGGAACTGATGGCGGATTTCGGATCGAACATGGTGGATAAATCGGCGTACGTGGTGAGTGTGTTGGTGACGGTGGGGGAAGGTAGGGCGGCGTTTGTGGATGAAGGAGGGATTCCGGTGGTGGTGGAGATAGTGGAGGTGGGGACACAGAGACAGAAGGAAATAGCGGTGGTTATATTGCTTCAAATTTGTGAGGAGAGTGTGGTTTACCGTAAGATGGTGTGTCGCGAAGGAGCGATTCCTCCTTTGGTTGCTTTGTCACAGTCCGGCACCAACCGCGCCAAGCAAAAGGCTGAGACACTAATAGAGCTTCTACGGCAACCAAGATCCAACAACGTCTCTACCTGTACCTCATAA 1008 0.4861 MARSLSELSISDNSSSAFSDCNSDRSGEFPTPSSQSRRLFIACAADDFIPQLISDLNSSSIHHQKQAAMEIRLLAKNKPENRLKIAEAGAINPLISLLSSPDLQLQEYGVTAVLNLSLCDENKELIALSGAIKPLVRALKSGTPTAKENSACALLRLSQVEENKLAIGKAGAIPLLVNLLQNGSFRGKKDASTAIYSLCSVKENKMRAVKAGIMKVLVELMADFGSNMVDKSAYVVSVLVTVGEGRAAFVDEGGIPVVVEIVEVGTQRQKEIAVVILLQICEESVVYRKMVCREGAIPPLVALSQSGTNRAKQKAETLIELLRQPRSNNVSTCTS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0234 335 Pfam Armadillo/beta-catenin-like repeat 79 117 IPR000225 GO:0005515
Lal21g0234 335 Pfam Armadillo/beta-catenin-like repeat 162 200 IPR000225 GO:0005515
Lal21g0234 335 Pfam Armadillo/beta-catenin-like repeat 120 158 IPR000225 GO:0005515
Lal21g0234 335 PANTHER U BOX DOMAIN-CONTAINING 1 329 - -
Lal21g0234 335 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 131 IPR000225 GO:0005515
Lal21g0234 335 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 1 329 - -
Lal21g0234 335 SMART arm_5 160 200 IPR000225 GO:0005515
Lal21g0234 335 SMART arm_5 201 241 IPR000225 GO:0005515
Lal21g0234 335 SMART arm_5 119 159 IPR000225 GO:0005515
Lal21g0234 335 SMART arm_5 284 324 IPR000225 GO:0005515
Lal21g0234 335 SMART arm_5 78 118 IPR000225 GO:0005515
Lal21g0234 335 SMART arm_5 242 282 IPR000225 GO:0005515
Lal21g0234 335 Gene3D - 30 334 IPR011989 -
Lal21g0234 335 MobiDBLite consensus disorder prediction 1 33 - -
Lal21g0234 335 SUPERFAMILY ARM repeat 39 322 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0234 Lal-Chr21 1550475 1552251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0234 32 329 U-box Gene Family AT2G23140 48.658 5.20e-84 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0603 25 4556643 4559343 Lal21g0234 21 1550475 1552251 PCT
Lal21g0234 21 1550475 1552251 Lal25g0603 25 4556643 4559343 PCT