Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0198 ATGCAAGGACAGAGAGGTGCAGTCGGTTCCATGCCTGAAACCTTTGAATTTGATTGCGGATCTACATCAAGTAATCCTACTATGGATCAGCAGATTTGCTGGAATAATGTGCGGACTAATGCTGAAAACCAAATACCTGAATATATGCTCTCTCCCAGTGATATTAACTCAGCTTATGTGAATTCTATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTTGGTGAGCCAAGTTCCAGTAATACACCAAATGAGATTAACAATAATGAACAGAATAGAGAACTTGAATGGTCGTCATCAATCAGTGTTGGCATATTATCTGGTCCAAGACTAGAAGAAAGACGCCTTGAATCAACCAATGCTCTTTCGCAGGATAACGTCGTTACAGGTCCAACACATATGCGTAGCTCCAATTCTCATCCAGTTTCCGAGAATGTCAACTTAAATTCAGGTATAGCAGACAGTGGCAGTGATAATAGTCAACAGCCGGATCACCATAACTTGCACAAGTCTAGTGGATCAGTAAATGAAAATACCCCACCCAGTATTGGTTCTGGTTCTTTCCTAATTCCTTCCGAAAATAACGGCCTCTTGGTAGAAGATACTGATGGCAGGCCAGGTTGTTCTCTAGACACTCGCCGTGTATCTTGTAAAAGAAAGGCCGTTGAAGGAAGTGATGGACAATCGTCAAATGGTGGAAGTTCTAGCTACACACAGCATGGTGATGGTAGTGCTTGGCATCCTCTTCTCACCCAGGACAATCCTCGGAGCAGTTTAAGCAGAGCTATTTCAGCAGAACAACTAAATGCAAGACTTGGCCTAGGCATGGGGGATGAAGCCTCTGAAAGTATTCCTAATTCAAATGTTGCAGGAAACTCGGAGAGCTTGTACAGGAATTTTCGTTTGAGGATAAATCCTTCAAACCCACAAAGTTCCACTCCTCCCACTGCATTCTCAGCTGGGAGTGTGATTAGGCATTCTGGCACTTCTCCATCCTCTTCGACGCCACAAAGGTTTCATCCTGTTGATAATTCTCTGAACTTGAGATCAGCACCGCCGATTGATGATATCATTCGTATAAACCAGCCACCTATAATCCATGTTCCTGCGTTGCCAAGAAATAGGCAATCATATAGATGGAGTGGTGGTTCTAGTTCAAGAAACATCCATTCATCAAACTCAATTATGTGTCCAGATAGGGATAATTTACCACAAGAAGGTGCAAGCTCAGGAAGTATGTCTAGAAATACTTTAGAACACTCAATGTTTGTACCTGCATCTGATTTAAGAAATTTGGCTCAAAACCCAGCAATTAGAGGTTCAAGTAGTGCAAACTTAAGTATCCCAGGGAACGTTGCTTCTTCTCCGCGAACTGCATTGAATGCAGCTACCGATCCATCATCTGCCTCAACCTGGGCTTCTCGTCCTAATTCTCCACAGCATCCCCGAAGATTATCAGAATATGTCCGCCGTTCCTTGTTTCCGCCTAGTTCCGAGACTGCTGGAGGTCCTAGCAATAATCACTCTTCCTTGCGATCTGGTCCTTCTGTGTCTGAATCAAGGGCTTTGTCATCTGGGGCACATCCAAGATCAGCATTGTGGTTGGAGAGGCAAGGTGATAGTGACCTTGGAATACCCCATTCATTGCGAACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGAATTGTATCTGAGAATGACCTTTTGTCTTTGATGCAGCTCCGCAATGTTTTGGGTCTTATGCGCAGGGGTGGGAATCTGCGATTTGAGACTTTTGCTTTCAATTTGCCACAGGATGTTATGATCCTTGACCAATCAGTACTTTCTGGGATGGCTGATATTCATGATAGGCATCGGGATATGCGACTTGATGTAGATAACATGTCTTATGAGGAGTTATTGGCTTTAGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAAGAAACCATATTGAAACTTTTGAAGCAGAAAAAGTATGTAGCTGAATCAGTATCTGAGATAGATGCAGAACCCTGTTGTGTTTGTCAGGAAAATTATGTTGATGGAGATGAAATTGGAACACTCAATTGTGGGCACGATTTCCATAGCAACTGTATTAAACAGTGGCTAATGCATAAGAATTTGTGCCCAGTTTGTAAGACAACGGGCTTGGCAACATGA 2169 0.4297 MQGQRGAVGSMPETFEFDCGSTSSNPTMDQQICWNNVRTNAENQIPEYMLSPSDINSAYVNSINHEWQNLSGWSFGEPSSSNTPNEINNNEQNRELEWSSSISVGILSGPRLEERRLESTNALSQDNVVTGPTHMRSSNSHPVSENVNLNSGIADSGSDNSQQPDHHNLHKSSGSVNENTPPSIGSGSFLIPSENNGLLVEDTDGRPGCSLDTRRVSCKRKAVEGSDGQSSNGGSSSYTQHGDGSAWHPLLTQDNPRSSLSRAISAEQLNARLGLGMGDEASESIPNSNVAGNSESLYRNFRLRINPSNPQSSTPPTAFSAGSVIRHSGTSPSSSTPQRFHPVDNSLNLRSAPPIDDIIRINQPPIIHVPALPRNRQSYRWSGGSSSRNIHSSNSIMCPDRDNLPQEGASSGSMSRNTLEHSMFVPASDLRNLAQNPAIRGSSSANLSIPGNVASSPRTALNAATDPSSASTWASRPNSPQHPRRLSEYVRRSLFPPSSETAGGPSNNHSSLRSGPSVSESRALSSGAHPRSALWLERQGDSDLGIPHSLRTLAVASEGSSRIVSENDLLSLMQLRNVLGLMRRGGNLRFETFAFNLPQDVMILDQSVLSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKKYVAESVSEIDAEPCCVCQENYVDGDEIGTLNCGHDFHSNCIKQWLMHKNLCPVCKTTGLAT 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0198 722 MobiDBLite consensus disorder prediction 207 222 - -
Lal21g0198 722 MobiDBLite consensus disorder prediction 118 258 - -
Lal21g0198 722 CDD RING-H2_TTC3 674 716 - -
Lal21g0198 722 Pfam Ring finger domain 675 716 IPR001841 -
Lal21g0198 722 MobiDBLite consensus disorder prediction 1 24 - -
Lal21g0198 722 ProSiteProfiles Zinc finger RING-type profile. 675 716 IPR001841 -
Lal21g0198 722 MobiDBLite consensus disorder prediction 378 415 - -
Lal21g0198 722 MobiDBLite consensus disorder prediction 499 524 - -
Lal21g0198 722 MobiDBLite consensus disorder prediction 224 243 - -
Lal21g0198 722 MobiDBLite consensus disorder prediction 441 482 - -
Lal21g0198 722 MobiDBLite consensus disorder prediction 121 193 - -
Lal21g0198 722 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 721 IPR045191 GO:0061630
Lal21g0198 722 SUPERFAMILY RING/U-box 664 718 - -
Lal21g0198 722 MobiDBLite consensus disorder prediction 441 524 - -
Lal21g0198 722 MobiDBLite consensus disorder prediction 75 94 - -
Lal21g0198 722 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 721 - -
Lal21g0198 722 SMART ring_2 675 715 IPR001841 -
Lal21g0198 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 719 IPR013083 -
Lal21g0198 722 MobiDBLite consensus disorder prediction 306 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0198 Lal-Chr21 1311167 1316663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0198 49 722 C3H Transcription Factor Family AT2G15530 35.238 1.97e-85 282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0198 21 1311167 1316663 Lal21g0198 21 1311167 1316663 ECH
Lal8g0639 8 4482406 4489343 Lal21g0198 21 1311167 1316663 PCT
Lal25g0589 25 4394193 4401110 Lal21g0198 21 1311167 1316663 PCT
Lal10g0820 10 15860942 15867302 Lal21g0198 21 1311167 1316663 PCT
Lal21g0198 21 1311167 1316663 Lal8g0639 8 4482406 4489343 PCT
Lal21g0198 21 1311167 1316663 Lal25g0589 25 4394193 4401110 PCT
Lal21g0198 21 1311167 1316663 Lal10g0820 10 15860942 15867302 PCT