Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0195 ATGGCTCTTGTTGTAGACAATAACTGTGAAAGCATTTTATTCTCTCTTGATTCCAACAAATCCGTCCCTGCTCCCTTCCTCACCAAAACATACCAACTCGTCGATGATCCAACCACCGATCACATCGTTTCTTGGGGCCAAGACGACACCACTTTCGTCGTTTGGCGTCCCCCTGAGTTTGCCAGAGATCTTCTCCCTAACTACTTCAAACACAACAACTTCTCTAGCTTCGTTCGCCAGCTCAACACTTATGGTTTTAGAAAGATTGTACCAGATAGATGGGAGTTTGCTAATGAATTATTCAAGAAAGGAGAGAAGCACTTGCTATGTGAGATCCATAGAAGAAAAACGGCGCAGCCTCAACAAATATCTACCAACCATCATCATGATTCTTCACTAGGAATCAATGTTCCTTCTTTCTTTCCCTTCACCAGTAGAGTCAGCATTTCTCCACCCTATGACTCCGATGAACAACTCAATTGGTGTGACTCTCCGCCACTCACTTCTCCATTGAGAGGAGGAGGACCACCCACTTCACTCATCAACGTAGGTGCTGCTAACTATAACAGTTCCGTTACGGCGCTATCTGAGGATAATGAAAGGCTGAGGAGGAATAACAATATGCTCATGTCGGAACTTGCACACATGAAGAAGCTTTATAATGACATCATCTACTTCGTTCAGAACCATGTCAAGCATGTGTCTCCTAGTAACACTTATTCACCTTCTTCTTTTCTACCTTGCAATGCACCACAGCAACAAGTAGCGTCTAATGTTTCAATGCTTCAAAGGCCAATGAACCAGATTTTGGGTTATTATTCTACTACCACAAACCCTAAGCAATCATTTCAAGTTCAACCTCAACCTCAACCTCAAGCCCAAGCACATATTGTGAACTCTCCCACCAACACTACAAGGGGTTCAGTGACTGTAGTTGAAGGGCATAGTAGTAATAGCAGCAAGACTAAGCTTTTTGGAGTGTTCCTACAGTCCAAGAAAAGGGTGCACCCTGAGTATGGATCTAATTTCATTAATTCAGAGACCAACAAGACTCGTTTGGTTTTGGAAAAGGATGACTTAGAGTGCCTTGAACGGTTGATGAACACTGAAAAATATATGGACCTTTAG 1128 0.4291 MALVVDNNCESILFSLDSNKSVPAPFLTKTYQLVDDPTTDHIVSWGQDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANELFKKGEKHLLCEIHRRKTAQPQQISTNHHHDSSLGINVPSFFPFTSRVSISPPYDSDEQLNWCDSPPLTSPLRGGGPPTSLINVGAANYNSSVTALSEDNERLRRNNNMLMSELAHMKKLYNDIIYFVQNHVKHVSPSNTYSPSSFLPCNAPQQQVASNVSMLQRPMNQILGYYSTTTNPKQSFQVQPQPQPQAQAHIVNSPTNTTRGSVTVVEGHSSNSSKTKLFGVFLQSKKRVHPEYGSNFINSETNKTRLVLEKDDLECLERLMNTEKYMDL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0195 375 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 361 IPR027725 -
Lal21g0195 375 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Lal21g0195 375 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal21g0195 375 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal21g0195 375 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal21g0195 375 Gene3D - 18 117 IPR036388 -
Lal21g0195 375 Coils Coil 185 219 - -
Lal21g0195 375 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal21g0195 375 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal21g0195 375 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal21g0195 375 PANTHER BNAC06G00310D PROTEIN 13 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0195 Lal-Chr21 1285385 1288001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0195 1 360 HSF AT1G46264 52.756 2.54e-110 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal21g0195 HSF_DNA-bind 5.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0195 21 1285385 1288001 Lal21g0195 21 1285385 1288001 ECH
Lal8g0638 8 4467319 4468959 Lal21g0195 21 1285385 1288001 PCT
Lal25g0588 25 4373107 4375554 Lal21g0195 21 1285385 1288001 PCT
Lal21g0195 21 1285385 1288001 Lal8g0638 8 4467319 4468959 PCT
Lal21g0195 21 1285385 1288001 Lal25g0588 25 4373107 4375554 PCT