LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal21g0140	ATGTCTAACTCCATTACCCATCAAAACCAATATGAGAACCCAGGGTTAAATGCTTATGACTCTTCTTTAAGAAACAATAGTGCATATCCTGAGGACTTAGGAGTATTTCCAAGCAGCTTCCAATCCATTGGAGATAGAATGTCACTAGCTGAAGGGTTAGAAATGAGCCACACAAGGCATTTGATGGATCTTCTTGGAGCAGCTAATGATAGGAGTCACCAAACTCAAGGCTTATCCCTTTCTTTAAGCTCTCACATGCTTATCCCTTCTGATGAGTACAGGCATAGACCCTTAAATCAGGGTCTCATGAACCCCAATTACTTCATGCATGGACAGGAAACAAGGGAACCTTGTAATCCTGCAGTGGAGCAGCATCTAAATAGTGAATATTTTTTCACCAGTGGTGCCACTTTTGCTTCATCTTCCACCTCATTAAACCTTTCTCCTTCAACCTCTTATGGAACTGAGTCCTTTGCTGCTGTCATTGGGAACTCAAGGTACCTGAAGCCAGCACAATCCCTTCTTGAAGATATTATTGGTGTTGGTGCAAATGTGGTTGACAGAATGAATGAAAAGTATGTGGAGAAGTTGTTTCATGGCAGTAGAACAGGTGCAAGAACACTTTCCTCAGAGCTAAAAGCAGAATTAAGGAACATGGGACCTTTATTAGCTGAAAAACAAGAACATCAAATGAAAATTGAAAAGTTGATTGCTTTGTTGGATGAGGTAGAGAGCAGATATGAGAAATACTACCATCAAATAGAAGAAGTGGTATCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCTAAGTGTTACACTGTTTTGGCACTTCAAGCCATGTCAAGGCATTTTTGCAGCTTGAGAGATGCAATAGTGTCACAAATAAATGTCGAGAAGAGAAAACTCTTTCAAGATTTACCTAAAATCAATAGTGAATTATCTCAGCTAACTCTATTTGATAGAGACAATAGACAGAGTAGAATGTCACTCCAACAACTTGGGATTATCCAAAGCCAACGCCAAGTATGGAGACCCATCAGAGGGTTGCCTGAAACTTCTGTAACAATTCTTCGTTCCTGGCTTTTTGAGCACTTTCTTCACCCTTATCCTAATGATTCTGAGAAGTTAATGCTAGCTTCTCAAACAGGTTTAACTAAAAACCAAGTATCAAATTGGTTTATAAATGCTCGGGTAAGGTTATGGAAACCAATGATAGAAGACATGTACAAAGAAGAGTTTGGAGAATCTTCAGAAGATTCTAACCCACCAGCTAACAACTATTTAACAAGGGAAGACACCACATACTGTGTTCAGGATTGA	1323	0.3938	MSNSITHQNQYENPGLNAYDSSLRNNSAYPEDLGVFPSSFQSIGDRMSLAEGLEMSHTRHLMDLLGAANDRSHQTQGLSLSLSSHMLIPSDEYRHRPLNQGLMNPNYFMHGQETREPCNPAVEQHLNSEYFFTSGATFASSSTSLNLSPSTSYGTESFAAVIGNSRYLKPAQSLLEDIIGVGANVVDRMNEKYVEKLFHGSRTGARTLSSELKAELRNMGPLLAEKQEHQMKIEKLIALLDEVESRYEKYYHQIEEVVSSFEMIAGLGAAKCYTVLALQAMSRHFCSLRDAIVSQINVEKRKLFQDLPKINSELSQLTLFDRDNRQSRMSLQQLGIIQSQRQVWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEDMYKEEFGESSEDSNPPANNYLTREDTTYCVQD	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal21g0140	440	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	27	422	-	-
	Lal21g0140	440	Gene3D	-	338	419	-	-
	Lal21g0140	440	MobiDBLite	consensus disorder prediction	413	434	-	-
	Lal21g0140	440	MobiDBLite	consensus disorder prediction	419	434	-	-
	Lal21g0140	440	Pfam	Homeobox KN domain	361	400	IPR008422	GO:0003677\|GO:0006355
	Lal21g0140	440	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lal21g0140	440	Coils	Coil	226	253	-	-
	Lal21g0140	440	SMART	prehox3	156	294	IPR006563	-
	Lal21g0140	440	SMART	HOX_1	344	408	IPR001356	GO:0003677
	Lal21g0140	440	ProSiteProfiles	'Homeobox' domain profile.	363	404	IPR001356	GO:0003677
	Lal21g0140	440	PANTHER	BEL1-LIKE HOMEODOMAIN PROTEIN 11	27	422	-	-
	Lal21g0140	440	SUPERFAMILY	Homeodomain-like	350	411	IPR009057	-
	Lal21g0140	440	CDD	homeodomain	344	405	IPR001356	GO:0003677
	Lal21g0140	440	Pfam	Associated with HOX	161	293	IPR006563	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal21g0140	Lal-Chr21	971859	975256	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lal21g0140		POX	1.2e-39	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal21g0140	21	971859	975256	Lal21g0140	21	971859	975256	ECH
	Lal17g0073	17	448482	457513	Lal21g0140	21	971859	975256	LSH
	Lal21g0140	21	971859	975256	Lal4g0089	4	541388	545016	LSH
	Lal21g0140	21	971859	975256	Lal25g0542	25	3957838	3963436	PCT
	Lal21g0140	21	971859	975256	Lal10g0864	10	16157930	16162433	PCT