Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0135 ATGAGTTATTTGTGGTGTTGTTCCATATTGGTGGCTCATATCATTCTCCTCCATTTCACTATTTTCTCTTTAGCCTCTCCTTCTCACAATACCTATAACCTATTCGAAACGTGGTGCAAACAACACAACAAAACATACTCTTCAGAACAAGAGAAACAATACAAATTCAAAGTGTTCGAAGACAACTATGCTTTTGTCACACAACACAATAACAGAGTGGGTAATTCTAGTTACACTCTTTCCCTCAACGCTTTCGCCGATCTCACTCACCATGAATTCAAAACCTCTCGTATCAGAGGCCTTTCCCCTCGTTTGTTCAGATTCAATCATAGTCATAATCAACAATCTGATAATCGTGTCTTACATCTTCCTTCTGAGTTTGATTGGAGAAATAATGGAGCGGTTACTCCGGTCAAAGACCAAGGAAGTTGTGGTGCTTGTTGGTCGTTCTCAGCTACAGGAGCTATTGAAGGTATAAATAAGATTGTTACAGGGTCTCTTGTAAGCCTTTCTGAACAAGAACTGGTAGATTGTGATAGAGACTACAATAGTGGTTGTGAGGGTGGAATCATGGAATATGCTTACCAATTTGTAATTGATAACCATGGAATTGACACTGAGAAAGATTATCCATATCAAGCTCATGACAGAACTTGCAGTAAGGATAAGCTAAAAAGGCATGTTGTAACAATCGATGGCTATACTGATGTTCCCTCGGGTGATGAGAAAAAGCTACTGAAGGCTGTTGCGTCTCAGCCTGTAAGCGTAGGCATATGTGGCAGCGATAGAGCTTTCCAGTTATACTCAAGGGGTATCTTTACCGGGCCATGTTCAACTTCTTTAGACCATGCAGTGTTGATTGTAGGATATGGATCAGAAAATGGTGTAGATTACTGGATTGCGAAGAATTCATGGGGAACATCTTGGGGAATGAATGGTTACATACACATGGTGCGGAACAGTGGCAATTCTGAAGGGCTATGTGGAATCAACACATTAGCTTCATATCCAACCAAGACCAAGCCTAATCCTCCGACACCGCCTCCTCCAAGTCCTACAAGGTGCAGTCTGTTTACTTATTGTTCAGAAGGGGAGACCTGTTGCTGTGCCAAGAGCTTTCTTGGAATATGCCTTTCATGGAAGTGCTGTGGTGTAACTTCTGCTGTGTGTTGTAAGGACAGGAGTCATTGTTGCCCTCATGATTATCCTGTTTGTGATACTGCAAGAGGACAATGCCTTAAGAGAGTTGCAAATGGGACGGCAACAAAGGCACTTGAGAATGAAGGCTCTTTCGGTACGCCAAGAGGCTGGAACTCTCAGTTTGAGAGAAACATGTCTCAGTTATTAACAGACATCAATAGCTGTCAAGAAGCATACAACTCTTATACAATGTGTAGTGAATACCAGACACTGAAGGTTAACAAACCAGATGGACACATCCAGAAACTACTCCAGGACGATAACAGAAAGCTTAAAAACCAGATTTGCATGTGGTCTGGTGCCCCATAG 1509 0.4208 MSYLWCCSILVAHIILLHFTIFSLASPSHNTYNLFETWCKQHNKTYSSEQEKQYKFKVFEDNYAFVTQHNNRVGNSSYTLSLNAFADLTHHEFKTSRIRGLSPRLFRFNHSHNQQSDNRVLHLPSEFDWRNNGAVTPVKDQGSCGACWSFSATGAIEGINKIVTGSLVSLSEQELVDCDRDYNSGCEGGIMEYAYQFVIDNHGIDTEKDYPYQAHDRTCSKDKLKRHVVTIDGYTDVPSGDEKKLLKAVASQPVSVGICGSDRAFQLYSRGIFTGPCSTSLDHAVLIVGYGSENGVDYWIAKNSWGTSWGMNGYIHMVRNSGNSEGLCGINTLASYPTKTKPNPPTPPPPSPTRCSLFTYCSEGETCCCAKSFLGICLSWKCCGVTSAVCCKDRSHCCPHDYPVCDTARGQCLKRVANGTATKALENEGSFGTPRGWNSQFERNMSQLLTDINSCQEAYNSYTMCSEYQTLKVNKPDGHIQKLLQDDNRKLKNQICMWSGAP 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0135 502 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 281 291 IPR025660 -
Lal21g0135 502 Pfam Papain family cysteine protease 123 337 IPR000668 GO:0006508|GO:0008234
Lal21g0135 502 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 21 373 - -
Lal21g0135 502 Pfam Granulin 366 413 IPR000118 -
Lal21g0135 502 SUPERFAMILY Cysteine proteinases 28 338 IPR038765 -
Lal21g0135 502 SMART GRAN_2 355 412 IPR000118 -
Lal21g0135 502 CDD Peptidase_C1A 124 336 IPR039417 -
Lal21g0135 502 PANTHER OS05G0508300 PROTEIN 21 373 - -
Lal21g0135 502 SMART pept_c1 123 338 IPR000668 GO:0006508|GO:0008234
Lal21g0135 502 PRINTS Papain cysteine protease (C1) family signature 141 156 IPR000668 GO:0006508|GO:0008234
Lal21g0135 502 PRINTS Papain cysteine protease (C1) family signature 283 293 IPR000668 GO:0006508|GO:0008234
Lal21g0135 502 PRINTS Papain cysteine protease (C1) family signature 298 304 IPR000668 GO:0006508|GO:0008234
Lal21g0135 502 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 298 317 IPR025661 -
Lal21g0135 502 Gene3D Granulin 352 416 IPR037277 -
Lal21g0135 502 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 141 152 IPR000169 -
Lal21g0135 502 Gene3D Cysteine proteinases 23 340 - -
Lal21g0135 502 SUPERFAMILY Granulin repeat 352 385 - -
Lal21g0135 502 Pfam Cathepsin propeptide inhibitor domain (I29) 35 93 IPR013201 -
Lal21g0135 502 SMART Inhibitor_I29_2 35 93 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0135 Lal-Chr21 938789 946623 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0135 21 938789 946623 Lal21g0135 21 938789 946623 ECH
Lal8g0556 8 3858100 3860532 Lal21g0135 21 938789 946623 PCT
Lal25g0539 25 3921102 3923803 Lal21g0135 21 938789 946623 PCT
Lal21g0135 21 938789 946623 Lal8g0556 8 3858100 3860532 PCT
Lal21g0135 21 938789 946623 Lal25g0539 25 3921102 3923803 PCT