Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0785 ATGTCTATACAGCATAACAATTCTGATATGGATGGCGTATCAGGGTCAGGATCTTGCCTTTATGATCTTTTCTGTTCTGAAACACCAAGTTTGAATTCTCAAAGTCAAAGGGATCGATGGTTGTCTTCAGGTCCACAGAAAAGGCTAGACCATTTGATGTGTCAAGCAGGGAACAAGTACTGTGCTGATTGTGGATCATCAGAGCCAAAATGGGTGTCTTCAAGTTTTGGAGTGTTTATTTGCATCAAGTGCTCTGGCATACATAGAAGCCTAGGAGTCCATATATCAAAGGTTCTATCACTGAAACTAGATGAATGGACAGATGAACAAGTTGATGCACTGGTAAAGTTGGGTGGAAATACTGTAATCAATAAGAAGTATGAAGCTTGCCTCCCTAACAACATAAAAAAACCAAATCCATATTCTTCGAACGAGGAGCGCATCGATTTTATCAGGAGAAAATATGAGTTGCTACAGTTTTTGGATTCTGAGGAGAATCTGTCATGCCCATTTGTACCATCTCATCAAAGAACTTCATCATCCATTCAGAATTGTTTGTCATCCAGAAATTATTTCCCAGACAAAAGGAACTACGATAAACAACCAACCAAAAATCGTATCGGGCTCTCATTTCGAAACAGCCGGGGAAGAAAAGATTACGGGCATAAGAGTACAAAGAAAAGTAACTCATTGGCCGGTATGGTCGAATTTGTTGGGTTGATCATGGTCAATGTTGTTAAAGGCACTAACCTGGCTGTCAGGGATGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTGAAGACACGCGTCATAAAGAACAATTTGAATCCAGTCTGGAATGAAAGCCTAATGCTGTCAATTCCAGAGAACATTCCTCCTCTTAAAGTGCTTGTGTATGACAAGGATACGTTCTCAACCGATGACTTTATGGGCGAGGCTGAAATAGACATTCAACCTCTACTTTCGGCTGCTAAGGCATACGAAAAATCTTCAATCAATGAGTCAATGCAGCTAGGAAAATGGGTTGCAAGTGGTGATAATACTCTTGTTAAAGATGGTATTATATTCCTTGAAGAAGGGAAGGTGAGACAGGAAATCTCAATGAGGCTACAAAAAGTTGAGAGAGGTGTGCTGGAGATTGAGCTTGAATGTGTTCCTCTTACTCAATAG 1188 0.404 MSIQHNNSDMDGVSGSGSCLYDLFCSETPSLNSQSQRDRWLSSGPQKRLDHLMCQAGNKYCADCGSSEPKWVSSSFGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALVKLGGNTVINKKYEACLPNNIKKPNPYSSNEERIDFIRRKYELLQFLDSEENLSCPFVPSHQRTSSSIQNCLSSRNYFPDKRNYDKQPTKNRIGLSFRNSRGRKDYGHKSTKKSNSLAGMVEFVGLIMVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLLSAAKAYEKSSINESMQLGKWVASGDNTLVKDGIIFLEEGKVRQEISMRLQKVERGVLEIELECVPLTQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0785 395 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 236 331 IPR035892 -
Lal20g0785 395 CDD C2_ArfGAP 238 382 - -
Lal20g0785 395 MobiDBLite consensus disorder prediction 193 226 - -
Lal20g0785 395 ProSiteProfiles ARF GTPase-activating proteins domain profile. 46 168 IPR001164 GO:0005096
Lal20g0785 395 SMART arf_gap_3 46 168 IPR001164 GO:0005096
Lal20g0785 395 CDD ArfGap 49 155 - -
Lal20g0785 395 SMART C2_3c 240 335 IPR000008 -
Lal20g0785 395 Gene3D C2 domain 238 394 IPR035892 -
Lal20g0785 395 PRINTS HIV Rev interacting protein signature 58 77 IPR001164 GO:0005096
Lal20g0785 395 PRINTS HIV Rev interacting protein signature 77 94 IPR001164 GO:0005096
Lal20g0785 395 PRINTS HIV Rev interacting protein signature 98 119 IPR001164 GO:0005096
Lal20g0785 395 SUPERFAMILY ArfGap/RecO-like zinc finger 46 161 IPR037278 -
Lal20g0785 395 Pfam Putative GTPase activating protein for Arf 47 162 IPR001164 GO:0005096
Lal20g0785 395 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 1 395 - -
Lal20g0785 395 Pfam C2 domain 241 331 IPR000008 -
Lal20g0785 395 ProSiteProfiles C2 domain profile. 222 337 IPR000008 -
Lal20g0785 395 Gene3D Arf GTPase activating protein 29 168 IPR038508 -
Lal20g0785 395 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 395 IPR044518 GO:0005096|GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0785 Lal-Chr20 8466993 8475940 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0785 20 8466993 8475940 Lal2g0760 2 4874547 4878673 PCT
Lal20g0785 20 8466993 8475940 Lal9g0668 9 4600975 4604046 PCT
Lal2g0760 2 4874547 4878673 Lal20g0785 20 8466993 8475940 PCT
Lal9g0668 9 4600975 4604046 Lal20g0785 20 8466993 8475940 PCT