Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0658 ATGTCTCCACAGAGTATAATTCTTTCACTATTAATCATCTTCTTCTCATTTGGTTTGTGCCTTGGCTTTTACATAGAGGACAAACATGATGAAACAAATTATAGTTCTAAAGTAAGGCTTAATGTTAATGACTATGGAGCAATACCTAATGATGATACAAGAGATGATACTGAGGCATTTAAGAAGGCATGGGATGAAGCATGTTCTACAGGTGCAGTGCTTGTAGTACCTAAAAATAATGTCTACAATCTTAAGCCTATCATATTTTCAGGTCCATGCAAACCCCATACATCCTTTAAGATCTATGGAACCATCAAAGCCTGGCCTGATTTGTCTGCATATAATAAAAGTAGAGGGATATGGATAAAGTTTGATGCTGTCGACAAGTTCAGATTTAATGGTGGCGGTATCATCGATGGTAATGGTAGAAACTGGTGGCAGAACTCCTGCAAAGTTAACAAAACCCTTCCATGCAAACATGCACCAACTTCTGTGATTTTCTTTGAATGCAACAACTTGAAAGTGCAAAACATTAAGTTCAGAGATGCACCGCAAATGCATGTTAGGTTCGATAAATGTTTCAATGTTAAAGCTTCAAAGTTAGTGGTCACAGCACCCGAACACAGCCCTAACACTGATGGAATTCACGTTAGTGGAACACGAAATATGATCATAAGGAACAGTGTCATTGGTACAGGTGATGACTGTATTTCAATAGTAAGTGGGTCACATCACATTCTTGCTACTGATATCACTTGTGGACCAGGACATGGAATTAGTATTGGAAGCTTAGGAGCTGGTAACTCAGAAGCTTTAGTCTCCAATGTGATAGTTAACAGAGCCACCTTAACTGGAACCACTAATGGAGTTAGAATAAAGAGTTGGCAGGGAGGTTATGGATATGCAAAAAAAATAAAATTTCTGAACATAGTAATGCGAAATGTGACTAATCCCATTATCATAGATCAACAATATTGTGATCGTAAAGAAGCATGCCCTGAGCAGGACTCAGCAGTAAAAGTGAGCAAAATAGTGTACCGAAACATCACAGGAACAAGTGCTTCAAAAGTGGCAATCAAATTTGATTGCAGCAAAGCAATCCCTTGCAAAAGAATCTCCTTGAAAGATGTGACTTTAAAAAGTGAAAACAGTACTGTTGACGCCATTGCTACATGTGAGAATGTTGAATATACCGAAAGAGGAGAACTTTACCCTAAGTGTTCTTCTTCTGAAGATGAGAAAGAGTGA 1248 0.3814 MSPQSIILSLLIIFFSFGLCLGFYIEDKHDETNYSSKVRLNVNDYGAIPNDDTRDDTEAFKKAWDEACSTGAVLVVPKNNVYNLKPIIFSGPCKPHTSFKIYGTIKAWPDLSAYNKSRGIWIKFDAVDKFRFNGGGIIDGNGRNWWQNSCKVNKTLPCKHAPTSVIFFECNNLKVQNIKFRDAPQMHVRFDKCFNVKASKLVVTAPEHSPNTDGIHVSGTRNMIIRNSVIGTGDDCISIVSGSHHILATDITCGPGHGISIGSLGAGNSEALVSNVIVNRATLTGTTNGVRIKSWQGGYGYAKKIKFLNIVMRNVTNPIIIDQQYCDRKEACPEQDSAVKVSKIVYRNITGTSASKVAIKFDCSKAIPCKRISLKDVTLKSENSTVDAIATCENVEYTERGELYPKCSSSEDEKE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0658 415 Pfam Glycosyl hydrolases family 28 73 396 IPR000743 GO:0004650|GO:0005975
Lal20g0658 415 PANTHER POLYGALACTURONASE 29 408 - -
Lal20g0658 415 ProSitePatterns Polygalacturonase active site. 250 263 IPR000743 GO:0004650|GO:0005975
Lal20g0658 415 SUPERFAMILY Pectin lyase-like 38 408 IPR011050 -
Lal20g0658 415 Gene3D - 25 414 IPR012334 -
Lal20g0658 415 PANTHER - 29 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0658 Lal-Chr20 6121626 6125354 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0658 20 6121626 6125354 Lal20g0658 20 6121626 6125354 ECH
Lal20g0658 20 6121626 6125354 Lal1g1503 1 17122701 17126444 LSH
Lal2g0026 2 174394 176541 Lal20g0658 20 6121626 6125354 PCT
Lal1g0688 1 4518268 4520407 Lal20g0658 20 6121626 6125354 PCT
Lal2g0756 2 4853836 4857293 Lal20g0658 20 6121626 6125354 PCT
Lal9g0666 9 4582458 4586237 Lal20g0658 20 6121626 6125354 PCT