Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0652 ATGATGAAGTCAGAAGGGGAAGCTGTGGCAAAGCAGATGAAGGTATTGGGTGGCAAAGTCTGCCAGATCTGTGGTGATAATGTTGGGAATACTATGGATGGTGAACCATTCATCGCGTGCGATGTTTGTGCTTTCCCTGTCTGCAGGCCGTGCTATGAGTATGAAAGGAAGGATGGGAATCAGTCCTGCCCCCAGTGCAAAACTCAGTACAAGAGGCACAAAGGTAGTCCTGCAATTCTCGGAGACAGGGAAGATGATGGTGGTGCTTATGATGGTGCCAGTGACTTCAATTACAATTCAGAAAATCAAAACCAAAAGCAGAAGATCGCAGAACGCATGTTGAGTTGGCAAATGGCATATGGGCGAGCAGAGGACGTTGGTGCTCCAAATTATGATAAGGAAGTTTCTCACAACCATATTCCTCTGCTGACCAGTGGACAAGAGGTTTCTGGAGAATTATCTGCAGCCTCACCCGAGAGGCTGTCTATGGCATCTCCCGCAGTTGCTCGTGGGAAACGTGTCCATAATCTTACATATTCATCTGATGCTAATCAATCACCAAATATCAGGGTTGTGGATCCAGGATTTGGCAATGTAGCATGGAAAGAAAGAGTTGATGGCTGGAAAATGAAACAAGATAAGAATGCTGTTCCAATGAGCACAGGACAGGCTATTTCTGAAAGAGGAGTAGGAGATATTGATGCTAGTACTGATGTGCTTGGGGATGACTCCTTGTTGAATGATGAAGCTCGGCAACCTCTGTCTAGGAAGGTTTCTCTTCCATCATCTAGGATAAATCCATACCGAATGGTCATTGTTCTGCGGCTGGTTATCCTCTGCATTTTTTTGCACTACCGAATCACAAATCCTGTGCCCAATGCATATGCATTGTGGTTGATTTCAGTTATATGTGAGATTTGGTTTGCCTTTTCTTGGATATTGGATCAATTCCCTAAGTGGCTTCCTGTGAACCGTGAAACATATCTTGACAGGCTTGCACTAAGGTATGACCGAGAAGGGGAACCGTCACAGCTAGCAGCTGTTGACATTTTTGTCAGTACTGTTGATCCATTAAAGGAGCCCCCACTTGTGACTGCAAATACTGTACTATCTATTCTAGCTGTTGACTACCCAGTGGATAAGGTCTCCTGCTATGTTTCTGATGATGGTGCCGCTATGTTAACATTTGAAGCACTGGCTGAAACATCAGAATTTGCAAGGAAATGGGTTCCTTTCTCCAAGAAATATAACATTGAGCCCCGGGCCCCTGAGTGGTATTTTGCACTGAAGATTGACTACTTGAAAGATAAAGTTCAACCATCATTTGTCAAAGAGCGTAGAGCAATGAAGAGAGAATATGAAGAATTTAAAATTCGTATCAACGGACTTGTTTCAAAGGCAGTGAAGGTTCCCGAAGAAGGATGGGTGATGCAAGATGGTACGCCATGGCCGGGAAACAACACTAGAGATCATCCAGGAATGATCCAGGTTTTCTTGGGCCAAAGTGGAGGGCTTGACACTGACGGTAATGAACTTCCACGTTTAGTCTATGTTTCCCGTGAAAAACGTCCAGGGTTCCAACATCACAAGAAGGCTGGTGCCATGAATGCACTTGTTCGAGTATCGGCTGTCCTTACTAATGGGCCTTTCTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCCAGGCCTTGAGGGAAGCTATGTGCTTTATGATGGATCCCAACCTCGGCAAAAATGTTTGCTATGTCCAGTTTCCTCAGAGATTTGATGGTATTGATAGGAATGATCGATATGCCAACCGTAATACTGTTTTCTTTGATATAAATTTGAGAGGTTTGGATGGCATTCAAGGCCCTGTTTATGTGGGTACTGGATGTGTCTTTAATAGAACGGCTTTATATGGTTATGAACCTCCTATTAAACCCAAACATAAAAAGATTGGAATGCTTTCTTCACTCTGTGGTGGGAGTCGAAGGAGTTCAAAATCTGGCAAGAAAGGCTCAGACAAGAAAAAGTCTAGCAAGCATGCTGATCCAACTGTGCCCATCTTCAATCTCGAGGATATAGAAGAAGGAGTAGAAGGTTCCGGGTTTGATGATGAGAAAACATTACTTATGTCACAAATGAGCCTGGAGAAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCATCTACACTTATGGAAAACGGTGGTGTTCCTCAGTCTGCTACTCCAGAAACTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGCGGTTATGAGGATAAAACAGAATGGGGAAGTGAGATAGGATGGATCTATGGTTCTGTCACAGAAGATATTCTTACTGGATTTAAGATGCATGCCCGTGGTTGGCGGTCTATATACTGCATGCCCAAGCTTGCAGCATTTAAAGGTTCTGCTCCTATCAATCTATCAGATCGGCTGAACCAAGTGCTTCGATGGGCTTTGGGTTCGGTTGAAATTCTTGTAAGTCGACATTGTCCAATCTGGTATGGTTATAGTGGAAGACTAAAGTGGCTGGAGAGGTTCGCTTATATAAACACCACGATCTATCCAATCACTTCGATTCCCCTTCTCATGTATTGTACCTTACCTGCTGTGTGTCTTCTGACTAACAAGTTCATTATTCCACAGATCAGTAACCTTGCAAGTATATGGTTTATCCTTCTCTTTCTTTCCATCTTCGCAACGGGTATCCTCGAGATGAGATGGAGTGGCGTTGGAATCGACGAGTGGTGGAGAAATGAACAATTTTGGGTTATCGGTGGTGTTTCGGCCCATCTTTTTGCTGTGTTCCAAGGTTTACTCAAAGTACTTGCTGGAATTGACACAAACTTCACTGTTACCTCAAAGGCATCAGATGAAGATGGAGATTTTGCTGAACTCTACTTGTTTAAATGGTCAACCCTTCTCATTCCACCAACAACTCTTCTCATCATAAACTTGGTCGGGGTTGTTGCAGGTATCTCGTACGCCGTTAACAGCGGCTACCAATCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCCTTTTGGGTGATCATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGACGCCAGAATCGAACACCGACCATCGTGGTGGTCTGGTCTATTCTGCTTGCATCCATTTTCTCGCTTTTATGGGTCCGAATTGATCCGTTTACGACAAGAGTTACTGGTCCTGATGTGGAGCAATGTGGAATTAACTGCTAG 3228 0.4396 MMKSEGEAVAKQMKVLGGKVCQICGDNVGNTMDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTQYKRHKGSPAILGDREDDGGAYDGASDFNYNSENQNQKQKIAERMLSWQMAYGRAEDVGAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERLSMASPAVARGKRVHNLTYSSDANQSPNIRVVDPGFGNVAWKERVDGWKMKQDKNAVPMSTGQAISERGVGDIDASTDVLGDDSLLNDEARQPLSRKVSLPSSRINPYRMVIVLRLVILCIFLHYRITNPVPNAYALWLISVICEIWFAFSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFSKKYNIEPRAPEWYFALKIDYLKDKVQPSFVKERRAMKREYEEFKIRINGLVSKAVKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSQALREAMCFMMDPNLGKNVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKIGMLSSLCGGSRRSSKSGKKGSDKKKSSKHADPTVPIFNLEDIEEGVEGSGFDDEKTLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLAAFKGSAPINLSDRLNQVLRWALGSVEILVSRHCPIWYGYSGRLKWLERFAYINTTIYPITSIPLLMYCTLPAVCLLTNKFIIPQISNLASIWFILLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWSTLLIPPTTLLIINLVGVVAGISYAVNSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0652 1075 Pfam Zinc-binding RING-finger 11 86 IPR027934 -
Lal20g0652 1075 Pfam Cellulose synthase 348 1068 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal20g0652 1075 PANTHER CELLULOSE SYNTHASE 3 1075 - -
Lal20g0652 1075 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 1075 - -
Lal20g0652 1075 SUPERFAMILY RING/U-box 7 88 - -
Lal20g0652 1075 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 500 639 IPR029044 -
Lal20g0652 1075 CDD mRING-HC-C4C4_CesA_plant 19 68 - -
Lal20g0652 1075 ProSiteProfiles Zinc finger RING-type profile. 21 67 IPR001841 -
Lal20g0652 1075 SUPERFAMILY Nucleotide-diphospho-sugar transferases 362 896 IPR029044 -
Lal20g0652 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Lal20g0652 1075 MobiDBLite consensus disorder prediction 654 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0652 Lal-Chr20 6019811 6027755 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0652 20 6019811 6027755 Lal20g0652 20 6019811 6027755 ECH
Lal1g0712 1 4765613 4772846 Lal20g0652 20 6019811 6027755 PCT
Lal9g0682 9 4708562 4716183 Lal20g0652 20 6019811 6027755 PCT