Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0507 ATGGACCCCACTCCGCTGCCATTCGAGGACGGTTTTGCGGCGGAGAAGCTCTTCAACCAGGGTTTCTCATACACCTACGATGACGTCATCTTCCTCCCTAACTACATTGACTTCGCTGCCGACGCCGTCGAACTCAAAACCAACCTCTCCCGCAACCTCCAACTCTCCGTCCCCCTTGTCGCCTCCCCCATGGACACCGTCTCTGAATCCGCCATGGCCGCCGCTATGGCCTCCCTCGGCGGCATCGCCATCATCCATTCCAACACCACCGCCGCCGTCCAAGCCTCCCTCGTCCGCGCTGCCAAGTCCCGCCGCGTACCAATCCTACATGACCCCGTCTTCCTCCCTCCCTCCGCCGAGATTGCCTCCGTAGACGACTTCTCCAACTCGCCGTTCATCCTCGTCACCGAGTCTGGAAACCCTAGATCCACGCTCCTCGGGTATGTCTCGAGGGACAACTGGTTAAAAACGAATCAAAACGACATAGGCTGCAGAGTTCGCGATTATTTAGTTGAATCACCGGTTACAGTACCATGGAGCTATGACTTGGCAGAAATCGATGCAACTTTGAACGAGAAGAAGGCCAATTCGGTTGGTTTGGTGAGGGATGATGGTGAATTGGTGGATTTGGTGACAAGAGAGGATGTGGATAGGGTTAAAGGTTATCCAAAATTGTTGGCACAGGGATCGGTGGGGTCGAACGGGGAATGGATAGTAGGGGCCGCAATCGGAACAAGGGAGCAGGATAAGGAGAGGTTGGAGCAATTGGTGAAAGCCGGAGTGAATGTCGTGGTGCTTGATAGCTCTCAGGGGAGTTCTATTTATCAGTTGGAGATGATCAAGTATGTGAAAAAAGTGTACCCTGAGATAGATGTGATTGGTGGGAATGTGGTTACTGCATATCAGGCTGATAGATTGATTCAGGCCGGTGTTGATGGGTTAAGGGTTGGTATGGGGTCTGGTTCTATATGCACTACACAAGAGGTTTGTGCGGTTGGGCGCGGTCAGGCAACTGCTGTTTACAAGGTCTCATCCACCGCATATAAAAGTGGTATTCCTGTGATTGCTGATGGTGGCATCTCAAACTCTGGTCATATTGTTAAGGCTTTGTCATTGGGAGCATCTACTGTTATGATGGGAAGCTTCTTAGCTGGCAGCACCGAGGCTCCTGGAGCTTATGAATATCAGAATGGTCAACGCGTCAAAAAGTATAGAGGAATGGGTTCCCTGGAAGCTATGACTAAAGGGAGTGATCAAAGGTACTTGGGTGATACAGCAAAGCTAAAAATTGCTCAAGGGGTTGTCGGAGCCGTGAAAGATAAGGGTTCTGTCTTGAAGTTCATACCGTACACCTTGCAAGCAGTCAGACAAGGGTTTCAAGATATCGGAGCCAGCTCTTTGAAATCTGCTCACAACCTTTTAAGATCCAGGGAGTTAAGGCTAGAGGTTCGGACTGGAGCAGCACAAGTTGAAGGTGGAATTCATGGGCTGGTTTCTTATGAAAAGAAATATTTTTGA 1518 0.5033 MDPTPLPFEDGFAAEKLFNQGFSYTYDDVIFLPNYIDFAADAVELKTNLSRNLQLSVPLVASPMDTVSESAMAAAMASLGGIAIIHSNTTAAVQASLVRAAKSRRVPILHDPVFLPPSAEIASVDDFSNSPFILVTESGNPRSTLLGYVSRDNWLKTNQNDIGCRVRDYLVESPVTVPWSYDLAEIDATLNEKKANSVGLVRDDGELVDLVTREDVDRVKGYPKLLAQGSVGSNGEWIVGAAIGTREQDKERLEQLVKAGVNVVVLDSSQGSSIYQLEMIKYVKKVYPEIDVIGGNVVTAYQADRLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSTAYKSGIPVIADGGISNSGHIVKALSLGASTVMMGSFLAGSTEAPGAYEYQNGQRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGVVGAVKDKGSVLKFIPYTLQAVRQGFQDIGASSLKSAHNLLRSRELRLEVRTGAAQVEGGIHGLVSYEKKYF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0507 505 PIRSF IMPDH 11 505 IPR005990 GO:0003938|GO:0006164
Lal20g0507 505 SMART IMPDH_2 22 495 - -
Lal20g0507 505 Hamap Inosine-5'-monophosphate dehydrogenase [guaB]. 23 503 IPR005990 GO:0003938|GO:0006164
Lal20g0507 505 PANTHER INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED 7 505 IPR005990 GO:0003938|GO:0006164
Lal20g0507 505 TIGRFAM IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 23 471 IPR005990 GO:0003938|GO:0006164
Lal20g0507 505 Gene3D Aldolase class I 11 505 IPR013785 -
Lal20g0507 505 CDD IMPDH 23 475 IPR001093 GO:0003824
Lal20g0507 505 ProSitePatterns IMP dehydrogenase / GMP reductase signature. 314 326 IPR015875 GO:0016491
Lal20g0507 505 PANTHER INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE 1 7 505 - -
Lal20g0507 505 Pfam IMP dehydrogenase / GMP reductase domain 24 495 IPR001093 GO:0003824
Lal20g0507 505 SUPERFAMILY CBS-domain pair 113 217 IPR046342 -
Lal20g0507 505 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 14 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0507 Lal-Chr20 4326809 4330800 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0507 20 4326809 4330800 Lal20g0507 20 4326809 4330800 ECH
Lal20g0507 20 4326809 4330800 Lal11g1547 11 18576061 18580197 LSH
Lal20g0507 20 4326809 4330800 Lal1g1515 1 17290962 17295073 LSH