Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0501 ATGGACTCTGCCAGCAAAGGAGAAGGCGGCGCCACCGTGGAAAACGGCGAAGGAAGGGAAGAGTGGAAACTCGATGTGAAGGGGTTTCAACTGCCACGTCAAACTCAACATGATCAAAATCATCACCGTTCTTCCCCTTTTCGTCTTCGAAAACACAAGAAGCAACGCAAAGTGGCAGAATATTACAAGAAACAAGAGAGGCTCCTTGAAGGTTTTACTGAGATGGAGACAATGGCTGAAACTGGTTTTTTCCCTGGAAGTCTCACTGAGGATGAAATGAAGCAACTAGCAAAGAGTGAAAGAATGGCAGTTTATGTGTCAAATGCATGCAACTTGGTGCTATTTGCAGCAAAAGTTTATGCCTCAATTGAAAGCAAATCATTAGCAGTTATTGCATCAACCCTTGATTCTCTCTTGGATCTCTTGTCTGGGTTCATATTATGGTTTACTGCAAATGCCATGAAAACACCAAACCAATATCACTATCCAATTGGAAAGAAACGCATGCAACCTGTGGGTATCATAGTTTTTGCATCAGTGATGGCAACCTTGGGGCTTCAGATTTTGATTGAGTCCGGCCGCGAAATTATTTCCAAATCCAAGCCTGAAGTGGATCCAGTAAAGGTGAACTGGATGATTGGGATTATGGTTATTGTGACTGTAGTGAAGTTCATTCTTATGGTTTATTGTAGAAGATTTAAGAATGAAATTGTCAGAGCTTATGCACAAGATCACTTTTTTGATGTCATAACTAATTCTATTGGATTAGCTGCTGCTGTTCTAGCTATTAAGTTTTTCTGGTGGATTGATCCAACAGGAGCTATTATTATAGCATTGTATACAATAAATACATGGTCAAGGACAGTGATTGAAAATGTATGGTCTCTGATTGGAAGAACAGCACCACCTGATTTTCTGGCTAAGTTAACTTACCTTATATGGAATCATAATGAACAGATTAAGCACATAGATACAGTTAGAGCATACACATTTGGTGCATGTTACTTTGTTGAAGTTGATATTGTCTTACCAGAGGACATGCGTCTGAATGAAGCACACAATATTGGTGAGACACTTCAAGAGAAGCTGGAACAACTACCAGAAGTTGAAAGGGCTTTTGTGCATATAGATTTTGAATTCACTCACAGGCCTGAACATAAGACTACGGTATGA 1173 0.399 MDSASKGEGGATVENGEGREEWKLDVKGFQLPRQTQHDQNHHRSSPFRLRKHKKQRKVAEYYKKQERLLEGFTEMETMAETGFFPGSLTEDEMKQLAKSERMAVYVSNACNLVLFAAKVYASIESKSLAVIASTLDSLLDLLSGFILWFTANAMKTPNQYHYPIGKKRMQPVGIIVFASVMATLGLQILIESGREIISKSKPEVDPVKVNWMIGIMVIVTVVKFILMVYCRRFKNEIVRAYAQDHFFDVITNSIGLAAAVLAIKFFWWIDPTGAIIIALYTINTWSRTVIENVWSLIGRTAPPDFLAKLTYLIWNHNEQIKHIDTVRAYTFGACYFVEVDIVLPEDMRLNEAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTTV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0501 390 TIGRFAM CDF: cation diffusion facilitator family transporter 103 377 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lal20g0501 390 PANTHER METAL TOLERANCE PROTEIN 9 17 390 - -
Lal20g0501 390 Pfam Dimerisation domain of Zinc Transporter 303 377 IPR027470 -
Lal20g0501 390 MobiDBLite consensus disorder prediction 13 27 - -
Lal20g0501 390 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 301 377 IPR036837 -
Lal20g0501 390 Gene3D Cation efflux protein transmembrane domain 101 296 IPR027469 -
Lal20g0501 390 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 17 390 - -
Lal20g0501 390 SUPERFAMILY Cation efflux protein transmembrane domain-like 99 298 IPR027469 -
Lal20g0501 390 MobiDBLite consensus disorder prediction 1 50 - -
Lal20g0501 390 Pfam Cation efflux family 106 296 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Lal20g0501 390 Gene3D Cation efflux protein, cytoplasmic domain 301 378 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0501 Lal-Chr20 4272624 4278118 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0501 20 4272624 4278118 Lal20g0501 20 4272624 4278118 ECH
Lal20g0501 20 4272624 4278118 Lal11g1545 11 18566930 18568865 LSH
Lal20g0501 20 4272624 4278118 Lal1g1514 1 17273530 17280463 LSH