Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0498 ATGGCGGCTTCTTCAATTCTCAGATCTGCAACTCTCTTTCCTTCTCACTCCGACCTTTCATCTTCTTCCGTTGATCGCTTTAAGGTGTTGAACAATGCCTCAAGTTTAAAATCTGTAAGGTTCCAGAATAGCATGTTTGGATCTTCAATTCCTTGTGAATCCTTAGTCTTAAGAAACTGCAATGCCCGGAGTATCCATCCAATCAAAGCCACAGCGACTGAAATCCCTCTTCCCGTAGAGAAGTCAAAAGGCACTGGAAAGACGCGAATTGGAATTAATGGTTTTGGTAGAATTGGGAGGTTGGTGTTACGTGTAGCTACTTCCAGGGATGATATTGATGTTGTAGCAGTTAATGATCCTTTTATTGATGCTAAATATATGGCTTACATGTTTAAGTATGATTCTACTCACGGACCATTCAAGGGAACCATTAAGGTCATAGATGACTCTTCTTTGGAAATTAATGGAAAGAAGATTAAAGTTGTGAGCAAAAGAGATCCAGTGGATATCCCTTGGGGTGATTTTGGGGCTGATTATGTTGTTGAGTCGTCAGGAGTTTTTACAACATTGGACAAAGCTTCATCACATTTGAAGGGTGGTGCCAAAAAAGTCGTAATATCTGCTCCATCTGCTGATGCGCCGATGTTCGTGGTAGGAGTGAATGAGAAGACATACCAGCCAAACATGGACGTTGTTTCTAATGCAAGCTGTACCACAAATTGTCTTGCTCCTCTTGCAAAGGTGGTTAATGAGGAGTTTGGTATAGTTGAAGGTTTGATGACAACAGTGCATGCAACAACAGCAACACAGAAGACTGTAGATGGTCCTTCAATGAAGGATTGGAGAGGGGGAAGAGGAGCAAGTCAAAATATTATTCCTAGTTCAACTGGTGCTGCGAAGGCTGTTGGTAAAGTTCTTCCTGAACTGAATGGAAAGCTCACCGGAATGGCATTCCGTGTTCCTACTGCTAATGTTTCTGTCGTGGACTTAACTTGTCGCCTTAAAAAAAAAGCTTCCTATGAAGATGTTAAAGCAGCAATAAAACGTGCCTCAGAGGGATCACTCAAAGGAATTCTTGGATACACAGATGAGGATGTTGTCTCTAATGACTTTGTTGGTGATTCAAGGTCGAGTATATTTGATGCTAAGGCCGGAATTGGTCTTAGTGACTCCTTCATGAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGCAACCGGGTGTTGGACCTTGTAGAGCACATGGCATTGTTGGGAGCACGCAATTGA 1272 0.4245 MAASSILRSATLFPSHSDLSSSSVDRFKVLNNASSLKSVRFQNSMFGSSIPCESLVLRNCNARSIHPIKATATEIPLPVEKSKGTGKTRIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFIDAKYMAYMFKYDSTHGPFKGTIKVIDDSSLEINGKKIKVVSKRDPVDIPWGDFGADYVVESSGVFTTLDKASSHLKGGAKKVVISAPSADAPMFVVGVNEKTYQPNMDVVSNASCTTNCLAPLAKVVNEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLKKKASYEDVKAAIKRASEGSLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSDSFMKLVSWYDNEWGYSNRVLDLVEHMALLGARN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0498 423 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 196 209 IPR020831 GO:0016620
Lal20g0498 423 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 231 249 IPR020831 GO:0016620
Lal20g0498 423 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 258 274 IPR020831 GO:0016620
Lal20g0498 423 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 315 332 IPR020831 GO:0016620
Lal20g0498 423 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 355 370 IPR020831 GO:0016620
Lal20g0498 423 Gene3D Dihydrodipicolinate Reductase; domain 2 236 401 - -
Lal20g0498 423 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 421 IPR020831 GO:0016620
Lal20g0498 423 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 242 399 IPR020829 GO:0016620
Lal20g0498 423 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 421 - -
Lal20g0498 423 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 89 411 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Lal20g0498 423 Gene3D - 89 415 - -
Lal20g0498 423 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 235 242 IPR020830 GO:0016620
Lal20g0498 423 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 87 253 IPR036291 -
Lal20g0498 423 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 89 189 IPR020828 GO:0051287
Lal20g0498 423 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 236 399 - -
Lal20g0498 423 SMART gp_dh_n_7 88 237 IPR020828 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0498 Lal-Chr20 4240495 4246330 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0498 20 4240495 4246330 Lal20g0498 20 4240495 4246330 ECH