Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0474 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAAACTAAAGTGAAGAGAGGACCTTGGAGCCCAGAAGAAGACCTTAAACTCATAGCTTTCATCCATAAAAATGGCCATGAAAATTGGAGAGCTGTTCCTAAACAAGCAGGGCTTCTCCGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGACCAGATGTAAAGAGAGGCAATTTTACAATACAAGAAGAGGAAGCTATAATAAAGCTACATAAGGACTTTGGAAACAAGTGGTCAAAGATTGCATCCTATTTACCTGGTAGGACAGACAATGAGATTAAGAATGTTTGGAACACTTACTTAAAGAAAAGATTGACTATAAAAAATTCAGAATCTAGTGCAGATGAATCGAAGATGGAATCATCAATAACTTCCTCATCTTCATCTGAATCATTTTCCACAAATGAGAAACGAAGTCTAGCTAAGACAATTCCTAATAGTGAAATAAATGAGCAACCATTGCAAGTGACAATGAATGAGAAAATTGAACATGATTTAGAAAAACATGTTTCCAATGAAGTCATTACTATCTCGAAGGGCCTAAAAGATTCATCAACTTCATTCTCTTTTGTTGAATCAAATATCCTTAACTCAAGCCATGTTGTTACCTTCACACAAGAACAACAATTGTGTTCTCCATTAACCTATCTAGGACCTTATGATATAGACAATAATAATATTAATAATAATACATTACAAGAAGTTGATAAACCAAACCATTTGATTGAAATACCATGGGATTCAGATGAAGATTTTTGGAAGCTTATAGATAACTTTGAATCCTTGCAATCAAGTGAAGTCCAATTAGAAGGGGTCCCACCTAACCAAACACAAAATCATGTTCAAGATGGTGAAAACATGAAGTGCTTCCATGATTTTGATAATGAATTTGGAATAGTAGGTGAAACAAAGGACTCTAATAAGGACTTGTTTCTACCAAAGAATTATGCAGCTGAGCTAGGAATAATGGACCCTCATACATTTGATTTGGATCTTATGGAAATGACAGAACCTGAACTAGACTTGAGAAATTTTCAATTATGGCTCATGGCATGA 1095 0.3489 MGKGRAPCCDKTKVKRGPWSPEEDLKLIAFIHKNGHENWRAVPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTIQEEEAIIKLHKDFGNKWSKIASYLPGRTDNEIKNVWNTYLKKRLTIKNSESSADESKMESSITSSSSSESFSTNEKRSLAKTIPNSEINEQPLQVTMNEKIEHDLEKHVSNEVITISKGLKDSSTSFSFVESNILNSSHVVTFTQEQQLCSPLTYLGPYDIDNNNINNNTLQEVDKPNHLIEIPWDSDEDFWKLIDNFESLQSSEVQLEGVPPNQTQNHVQDGENMKCFHDFDNEFGIVGETKDSNKDLFLPKNYAAELGIMDPHTFDLDLMEMTEPELDLRNFQLWLMA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0474 364 PANTHER - 1 323 - -
Lal20g0474 364 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lal20g0474 364 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lal20g0474 364 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lal20g0474 364 MobiDBLite consensus disorder prediction 129 166 - -
Lal20g0474 364 SMART sant 15 65 IPR001005 -
Lal20g0474 364 SMART sant 68 116 IPR001005 -
Lal20g0474 364 CDD SANT 71 114 IPR001005 -
Lal20g0474 364 Gene3D - 71 151 - -
Lal20g0474 364 Gene3D - 16 68 - -
Lal20g0474 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lal20g0474 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Lal20g0474 364 MobiDBLite consensus disorder prediction 124 166 - -
Lal20g0474 364 CDD SANT 18 63 IPR001005 -
Lal20g0474 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lal20g0474 364 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lal20g0474 364 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0474 Lal-Chr20 3930532 3933873 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal20g0474 Myb_DNA-binding 5.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0474 20 3930532 3933873 Lal20g0474 20 3930532 3933873 ECH