Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0445 ATGCTTAGTTCAATTATGTCTACACTTCTGAATTCTGTGTCTCCAGCTGCTGCTATTATTTCATCAGAAAAAACAAAACAAAGAGGCTATTGTTTCTTCTATTCCCAGGTTCAAAATCTTCATTCTTTTTCACTTAGCAATGGTTTTTCTAGAGTTTTGGCTTTGAGCCAGATTACCCTTTCCCATAAAGATTCAGTTTTTACTATTCCCAATTGGAGGGTTGGGAAGAATGATCAAAAGAGTAAGGAGCTTAGGATTAATGATGCATTTCTTCATTTAGAGTATATGGTGGATAAGGGTCATAAGCCTGATGTAAGTCGAGCAACTCAGCTATTGTATGATCTTTGCAAATCGAATAAAGCGAGGAAGGCGTTTCGGGTGATGGAGATGATGGTAAATTCAGGTATTATACCTGATCCAGCTTCTTATACATATTTGGTTAATTATTTGTGCAAGAGAGGCAATGTTGGATATGCAATGCAGTTAGTTGAGAAAATGGAAGCGCGCAAACTTCCAACTAATACCGTTACTTATAACACTCTACTTAAAGGGCTTTGCACACAAGGGAATTTGAACCAGTGCTTGCAGCTTTTAGATCGGTTAACGAAGAAAGGACTAGTTGCGAATGCTTTCACGTATTCCTTTTTGTTGGAAACTGCTTATAAGGAAAGGGGAGTGGATGAAGCCATGAAACTTCTAGAAGAGATAATTGATAGAGGCGGTGAACCTAATTTAGTTAGTTATAATGTTTTGTTAACTGGATTGTGCAAGGAAGGTAGATTTGAAGAAGCCATTCAGCTTTTCAGGGAATTGCCTGCAAAAGGGTTCAATCCAAGTGTTGTGAGTTATAATATTTTACTAAGGAATTTGTGCTATGAAGGGAGATGGGAGGAGGCTAATGAGCTGTTAGCTGAAATGGATAAAGAAGACGAATCTCCTTCTATAGTAACATACAACATATTAATTACTTCTCTTTCTCTCCACGGAATGACGGAACAAGCGTTCAAAGTTTTAGATGAAATGACAAGGAGTGGGTTCAAGGCAAGTGCTACTAGCTATAATCCAATTATTGCCCGTCTCTGCAAGGAAGGGAAGGTGGAGCTTGTAGTTCAATGTCTAGACCAATTGATTTCTCGACGCTGCAATCCTAATGAGGGAACATACAACGCTATCGGGATGCTTTGTGAGCAGGGGAAGGCGCAAGAGGCGTTCTTTATAATACAAAGCTTAGCTAGTAAGCAAAACTACCATTTGCATGATTTTTACAGAAATGTGATTTCAATCCTGTGTAGGAAAGAAAACACATACCCTGCGTTTCAGATGCTATACGAAATGACAAAGCACGGATTTACTCCGGATTCTAATACTTACTCATCTTTGATAAGAGGACTGTGTAAGGAGGGAATGTTGGATGAGGCTACTCATATTTTCGGGATTTTGGAAGAATATGGCTATAAGCCTGATATTGATAACTACAATGCACTTATACTTGGATTTTGCAAATCGCGAAGAACGGACTTGTCGATGGAGATATGTCAGATGATGATTAATAAAGGATGTATGCCTAATGAGACAACCTATACCATTTTTGTTGAAGGGCTTGCTTATGAAGGAGAAACGGATATGGCAGCCGAGCTTCTGAAAGAGTTATATTTGAAAGAGGTTCTGTGCCGAAGTACTGTTGAAAGACTTTCTATGCAATATGACCTCAAGGAATTAGCAGTGTAG 1728 0.3877 MLSSIMSTLLNSVSPAAAIISSEKTKQRGYCFFYSQVQNLHSFSLSNGFSRVLALSQITLSHKDSVFTIPNWRVGKNDQKSKELRINDAFLHLEYMVDKGHKPDVSRATQLLYDLCKSNKARKAFRVMEMMVNSGIIPDPASYTYLVNYLCKRGNVGYAMQLVEKMEARKLPTNTVTYNTLLKGLCTQGNLNQCLQLLDRLTKKGLVANAFTYSFLLETAYKERGVDEAMKLLEEIIDRGGEPNLVSYNVLLTGLCKEGRFEEAIQLFRELPAKGFNPSVVSYNILLRNLCYEGRWEEANELLAEMDKEDESPSIVTYNILITSLSLHGMTEQAFKVLDEMTRSGFKASATSYNPIIARLCKEGKVELVVQCLDQLISRRCNPNEGTYNAIGMLCEQGKAQEAFFIIQSLASKQNYHLHDFYRNVISILCRKENTYPAFQMLYEMTKHGFTPDSNTYSSLIRGLCKEGMLDEATHIFGILEEYGYKPDIDNYNALILGFCKSRRTDLSMEICQMMINKGCMPNETTYTIFVEGLAYEGETDMAAELLKELYLKEVLCRSTVERLSMQYDLKELAV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0445 575 Gene3D Tetratricopeptide repeat domain 419 480 IPR011990 GO:0005515
Lal20g0445 575 Gene3D Tetratricopeptide repeat domain 481 554 IPR011990 GO:0005515
Lal20g0445 575 SUPERFAMILY HCP-like 88 303 - -
Lal20g0445 575 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 574 - -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 316 349 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 246 279 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 142 172 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 352 385 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 492 524 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 176 209 IPR002885 -
Lal20g0445 575 TIGRFAM PPR: pentatricopeptide repeat domain 456 489 IPR002885 -
Lal20g0445 575 Pfam PPR repeat family 174 218 IPR002885 -
Lal20g0445 575 Pfam PPR repeat family 487 535 IPR002885 -
Lal20g0445 575 Pfam PPR repeat family 115 152 IPR002885 -
Lal20g0445 575 Pfam PPR repeat family 313 354 IPR002885 -
Lal20g0445 575 Pfam PPR repeat family 243 291 IPR002885 -
Lal20g0445 575 Pfam PPR repeat family 422 466 IPR002885 -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Lal20g0445 575 Gene3D Tetratricopeptide repeat domain 292 405 IPR011990 GO:0005515
Lal20g0445 575 Gene3D Tetratricopeptide repeat domain 78 189 IPR011990 GO:0005515
Lal20g0445 575 Gene3D Tetratricopeptide repeat domain 190 291 IPR011990 GO:0005515
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Lal20g0445 575 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 574 - -
Lal20g0445 575 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0445 Lal-Chr20 3614983 3616710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0445 83 560 Glycosyltransferase AT1G05670 24.948 2.94e-44 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0445 20 3614983 3616710 Lal20g0445 20 3614983 3616710 ECH