Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0439 ATGAGCAACATAAGCATAGTAGAAGCTAAGCTACCACCTGGGTTCAGGTTTCATCCTAAAGATGAAGAACTTGTGTCTCATTATTTGATGAAGAAAGTCATTCACAATGATTCCTCTCTCTTGATTCATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTCAGACAGCATGTGTAGGAGGGAAAGAGTGGTATTTCTACACACAAAGAGACCGGAAATATGCAACAGGGCTACGCACAAATCGTGCGACAGGGTCAGGGTATTGGAAGGCCACAGGAAAAGACAGAACAATTCACCTCAAAGGTACCCTTATTGGAATGAGAAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGACCAAAACTGAGTGGGTCATGCATGAATTTCGCATTCAAGGTCCTCATGGCCCTCCTAAACTTTCTTCTTCCAAGGTAATATACAATGGATTTTTATTTGTTAATTACTTCAAACTATTTTAA 489 0.411 MSNISIVEAKLPPGFRFHPKDEELVSHYLMKKVIHNDSSLLIHVDLNKCEPWDIPQTACVGGKEWYFYTQRDRKYATGLRTNRATGSGYWKATGKDRTIHLKGTLIGMRKTLVFYQGRAPKGTKTEWVMHEFRIQGPHGPPKLSSSKVIYNGFLFVNYFKLF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0439 162 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Lal20g0439 162 Gene3D NAC domain 20 151 IPR036093 GO:0003677|GO:0006355
Lal20g0439 162 ProSiteProfiles NAC domain profile. 11 151 IPR003441 GO:0003677|GO:0006355
Lal20g0439 162 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 137 - -
Lal20g0439 162 SUPERFAMILY NAC domain 2 140 IPR036093 GO:0003677|GO:0006355
Lal20g0439 162 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2 8 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0439 Lal-Chr20 3563168 3569205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0439 2 147 NAC Transcription Factor Family AT1G56010 75.497 3.14e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal20g0439 NAM 1.5e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0439 20 3563168 3569205 Lal20g0439 20 3563168 3569205 ECH