Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0421 ATGGCTGCGGTTGCTGAGGTTTCTGCTGATGCAATCAACACAATGGTCTCAAAACCGAAGCCAGAATCTGAATTCAGTGTGCAGAAGCTGGTTGATATGTTCACAAAGTTGAATCCTTTGGCAAAAGAGTTTTTTCCTTCATCATATTCTCATAATCATGATCAACTCCATCAGGGCTTTAATCAGTTCTTACCGAACAATTTTATGATCAATGCTAAGCCTTTGGCTAATGATAATTACCCTAACCGAAGGAGAAGAAATAGTTTTAACCAGGGGAGAAGGTTGAATGGAAGATCACTCAAGGCTCAGAGAGAAGATAGCGTTAGAAGAACAGTATATGTTTCTGACATTGATCAGCAAGTTACGGAGGAGCAGCTTGCAGCCTTATTCAGCAATTGTGGACAAGTAATCGATTGCCGAATTTGTGGTGATCCACACTCAGTTCTTCGTTTTGCTTTTGTTGAGTTTTCAGATGAGTATGGTGCAAGGACAGCTTTAAACCTTGGTGGCACTGTGCTTGGATTCTATCCAGTCAAGGTTCTTCCTTCAAAAACTGCCATCCTCCCCGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAACGGGAAATGTGTGCCAGGACTGTCTATTGTACCAACATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAAACAGCTTGTGGCGAGGTTACGCGCTTGAGGATTTTGGGGGATCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATAGCAGAAAGTGCCATTGCTGCACTAAACTGTAGTGGAATGCTTTTGGGAACCCACCCTATCAGGATAAGTCCTTCGAAGACTCCGGTGAGGCCAAGGGTCATTCGTCCAACGTCACATTAA 888 0.4291 MAAVAEVSADAINTMVSKPKPESEFSVQKLVDMFTKLNPLAKEFFPSSYSHNHDQLHQGFNQFLPNNFMINAKPLANDNYPNRRRRNSFNQGRRLNGRSLKAQREDSVRRTVYVSDIDQQVTEEQLAALFSNCGQVIDCRICGDPHSVLRFAFVEFSDEYGARTALNLGGTVLGFYPVKVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFETACGEVTRLRILGDQVHSTRIAFVEFAIAESAIAALNCSGMLLGTHPIRISPSKTPVRPRVIRPTSH 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0421 295 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
Lal20g0421 295 CDD RRM1_CID8_like 108 187 IPR034823 -
Lal20g0421 295 SMART rrm1_1 111 181 IPR000504 GO:0003723
Lal20g0421 295 SMART rrm1_1 208 279 IPR000504 GO:0003723
Lal20g0421 295 MobiDBLite consensus disorder prediction 75 101 - -
Lal20g0421 295 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 295 - -
Lal20g0421 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Lal20g0421 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
Lal20g0421 295 SUPERFAMILY RNA-binding domain, RBD 198 288 IPR035979 GO:0003676
Lal20g0421 295 CDD RRM2_CID8_like 203 284 IPR034825 -
Lal20g0421 295 SUPERFAMILY RNA-binding domain, RBD 88 186 IPR035979 GO:0003676
Lal20g0421 295 MobiDBLite consensus disorder prediction 81 97 - -
Lal20g0421 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Lal20g0421 295 Gene3D - 73 186 IPR012677 -
Lal20g0421 295 Gene3D - 195 288 IPR012677 -
Lal20g0421 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 185 IPR000504 GO:0003723
Lal20g0421 295 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0421 Lal-Chr20 3379564 3384791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0421 107 264 Eukaryotic Initiation Factors Gene Family AT1G34140 27.950 7.26e-13 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0421 20 3379564 3384791 Lal20g0421 20 3379564 3384791 ECH