LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal20g0414	ATGCTCGAACCGCGTGAATCTGATATACCTGTCCTATTTCTGTTCCTGGTTGTACTTCCGTTGGTTGCTTATATCTTGCTTGGAAAATGGAGTGATACTACTAAGAAGAGAGATAGGATAACTTTGCTTGCCCAATTGGCTGCTGAAGAAGCTCTGAGATCAGAAGAAATGGCCGTTCCTGATGTAATTCCTATGGTATCTTCTCCAAAGAGTGAACTTCCTCTGTGTGCCAGGTGCTCTGCTCCAGCGAAAACTCGCTGCTCCAGATGCAAATGTGTTAGATATTGCTCTGGAAATTGTCAAATAATTCATTGGAGGCAAATTCACAAGCTCACATGCAAGCAACTGGAAACTGATAAATCAGGCTCGTTCCCTCTGGCTGTTTCAGTTGACGAATTCAGTCATGGGAATGGCTTTTATGACCATTTGGACAACCAGTTATTTGGTCATAATTTGAAGCAGATTTTAAGGGAGAGTGCAGCCTTGGATAATTTGGTTCACCCTCTAACTGGTCATGATGCTTCTGCTACAGCAGATTTCCTCCCATTAAGTAACTCTGAAGTCTCAACTTTTGAGAGAAGAACTTCCTTTAAATCCAACCGTGGAACACGAAGAAGAGACAATGAGTCTATGGGCGAATCTTCTATTGAATCTTCTGAATATAAGGCTACCAGTTCTCCCTCTTCAAGTGTGGCATCAAAGGAGGCATTTATGAGAAAGTCAAGAAATACTGACTATTCTGTATCGGAGGAAGACATTTCAAAGAAGGTCAATGCCGGTGGAAGTAATGTTTACTTTTACGGACAAGATGTTTCAAGAAGCATGACCCTTGAGGATTGTAACCATCAAAGTACGAATGGAAATGCTTTTACACCAAAAAACAACTATGGATGCTCAAGTGCAGGGAAGAATGATGAAAATGCAGATGAATGTGACACAGACATCCTTACAAACGGAGGAAATGTAGTCAAAGGGGGGAATTGTTATTCTGATGAAGCAGCACAATGCTCTTCTGAAACGACAGTTAAAGGAAGTGTGAAGACTAAAAAGGCATTACACCCTCCCAAGATGAAAAGTTCTAAATCACCGAAGTCAACATCAAAGGTGTCGACAGACTTTTGTTGCCCAGAAATAGAGAAAAAAGGGAAAGCTGCAGATGAACCAAAAGTCTTTGAAATCAGAGATACCATCCCATTACATGCTTCCCATGGGGTTGCAAGCACTGGATTTATGAAAATGATTGGCTTGAGGAAGTCAACAAAACTTACAGCGCCGGTCTCCTCAGAAGGTAGTGGAGTAAGGTTTAAGAAGATAAAGAAGATGAAGATGTTGTTTCCTTATGAGGAGTTTGTAAAGATTTTTCAGAGTGAAGTATTTGGCTTATGTCCCAGGGGCCTTCTAAATTGTGGGAACAGTTGCTATGCGAATGCTGTCTTGCAGTGCTTAACTTCTACAAAGCCTCTTGTCGTCTATTTGTTTTGCAGATCACATTCAAAATCCTGTTGCGCTAGAGATTGGTGTCTCATGTGTGAGTTAGAACAACACATAATGACTTTGAGAGAAAATGGGGCTCCTCTATCTCCTAGTAGGATACTTTGGCATATGCGGAGCATTAATCGCCACATGGGTGATGGAAGTCAGGAAGATGCCCATGAATTTTTAAGTTTTAGTGCTGGTGGAGATATCAAAGAATTGCTTCTAATTGCATCAATGCAATCTATATGCTTGGAGGGACTTGGTGGTGAGAAAAAGGTTGATCCTAGACTACAGGAAACAACTTTTATACAACATACTTTTGGTGGTCGTCTTCAATCCAAGGTTAAGTGTTTAAATTGCAATCACGAGTCTGAAAGGTATGAAAACATTATGGACCTAACGTTGGAGATATTGGGTTGGGTTGAGTCGCTGGAAGACGCACTTACTCAGTTTACTTCCCCTGAAGATTTGGATGGTGAAAATATGTACAGATGTGGAAGGTGCACTTCATATGTTCGAGCTAGAAAGCAACTGAACATCCATGAGGCCCCTAACATCCTCACCGTTGTTTTAAAGAGATTTCAGGAAGGAAGGTATGGGAAAATTAACAAGTGCATAACTTTTCCTGAAATGTTGGATATGATTCCTTTTATGACTGGGACGGGTGATCTTCCTCCACTTTACATGCTTTATGCTGTCGTTGTGCATCTGGACACACTAAATGCATCTTTCTCTGGACATTATATTTCATATGTGAAAGATCTGCAAGGAAATTGGTACAGGATAGATGATACTGAGGTTCAGCCAGTGCTGATTGATCAAGTGATGTCAGAAGGAGCCTATATCTTATTCTACTTGAGGTCTTGCCCCCGCCCTCCGATAGAACTTACTGGGAAAGTCATGCAGCAATCGGTTTCCGAATCTTCAAAACAGTACCCAGTGGAAGTGCAGAAGCCATCTAAATCAGGACATAGCAGACATGAAGGTCACTTTATAGTCCCTGAACTTTCACCAATTGCCAGACCTACTCACCTCAGTGACACCTATAATGGCGGCTACCTTAGAAGAAGCGCTGCCAATAGAAACTCCCTGCCAGTAACACAAACATACGCGGAAAGCATTCGGCATGAGTTTTCAGATGCTACATCAAGTGACTGGTCCATTTTCACAAGCTCCGACGAGGCTTCTTTCACAACCGAGAGCACCCGAGACTCCTTCAGTACTGTTGATTATGGTGATTCTTGCAATATGGATCCAATTTCATCTATCTTCAATTATTCCAGAGAAAACTCCTACAACAAGTTTTCATATAGTAGGCCATTAACCAGGTTCTTACCTCAAAAGGGTCATATTGAGAAAGTACAAAGAATTGATCAGTCTAAAAAGGGAATCCATTCTTCAATTGAGTATCCATCAAATGGTAATTGTGGCATGTTTGTAAATTATGGAAGCAATCCTCTAAGTGGTATTACTAGGACTTCTTAG	2961	0.4127	MLEPRESDIPVLFLFLVVLPLVAYILLGKWSDTTKKRDRITLLAQLAAEEALRSEEMAVPDVIPMVSSPKSELPLCARCSAPAKTRCSRCKCVRYCSGNCQIIHWRQIHKLTCKQLETDKSGSFPLAVSVDEFSHGNGFYDHLDNQLFGHNLKQILRESAALDNLVHPLTGHDASATADFLPLSNSEVSTFERRTSFKSNRGTRRRDNESMGESSIESSEYKATSSPSSSVASKEAFMRKSRNTDYSVSEEDISKKVNAGGSNVYFYGQDVSRSMTLEDCNHQSTNGNAFTPKNNYGCSSAGKNDENADECDTDILTNGGNVVKGGNCYSDEAAQCSSETTVKGSVKTKKALHPPKMKSSKSPKSTSKVSTDFCCPEIEKKGKAADEPKVFEIRDTIPLHASHGVASTGFMKMIGLRKSTKLTAPVSSEGSGVRFKKIKKMKMLFPYEEFVKIFQSEVFGLCPRGLLNCGNSCYANAVLQCLTSTKPLVVYLFCRSHSKSCCARDWCLMCELEQHIMTLRENGAPLSPSRILWHMRSINRHMGDGSQEDAHEFLSFSAGGDIKELLLIASMQSICLEGLGGEKKVDPRLQETTFIQHTFGGRLQSKVKCLNCNHESERYENIMDLTLEILGWVESLEDALTQFTSPEDLDGENMYRCGRCTSYVRARKQLNIHEAPNILTVVLKRFQEGRYGKINKCITFPEMLDMIPFMTGTGDLPPLYMLYAVVVHLDTLNASFSGHYISYVKDLQGNWYRIDDTEVQPVLIDQVMSEGAYILFYLRSCPRPPIELTGKVMQQSVSESSKQYPVEVQKPSKSGHSRHEGHFIVPELSPIARPTHLSDTYNGGYLRRSAANRNSLPVTQTYAESIRHEFSDATSSDWSIFTSSDEASFTTESTRDSFSTVDYGDSCNMDPISSIFNYSRENSYNKFSYSRPLTRFLPQKGHIEKVQRIDQSKKGIHSSIEYPSNGNCGMFVNYGSNPLSGITRTS	986

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal20g0414	986	Gene3D	Cysteine proteinases	461	784	-	-
	Lal20g0414	986	Gene3D	-	66	119	-	-
	Lal20g0414	986	MobiDBLite	consensus disorder prediction	197	213	-	-
	Lal20g0414	986	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15	20	938	-	-
	Lal20g0414	986	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	464	780	IPR028889	-
	Lal20g0414	986	CDD	Peptidase_C19E	463	778	-	-
	Lal20g0414	986	MobiDBLite	consensus disorder prediction	192	251	-	-
	Lal20g0414	986	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	465	480	IPR018200	GO:0004843\|GO:0006511
	Lal20g0414	986	ProSiteProfiles	Zinc finger MYND-type profile.	76	113	IPR002893	-
	Lal20g0414	986	MobiDBLite	consensus disorder prediction	800	819	-	-
	Lal20g0414	986	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	20	938	-	-
	Lal20g0414	986	SUPERFAMILY	Cysteine proteinases	461	780	IPR038765	-
	Lal20g0414	986	SUPERFAMILY	HIT/MYND zinc finger-like	72	116	-	-
	Lal20g0414	986	Pfam	Ubiquitin carboxyl-terminal hydrolase	465	777	IPR001394	GO:0004843\|GO:0016579
	Lal20g0414	986	MobiDBLite	consensus disorder prediction	214	237	-	-
	Lal20g0414	986	ProSitePatterns	Zinc finger MYND-type signature.	76	113	IPR002893	-
	Lal20g0414	986	MobiDBLite	consensus disorder prediction	346	368	-	-
	Lal20g0414	986	Pfam	MYND finger	76	113	IPR002893	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal20g0414	Lal-Chr20	3320014	3328842	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal20g0414	438	779	Miscellaneous Gene Families	AT4G31670	52.632	1.79e-122	385

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal20g0414	20	3320014	3328842	Lal1g1575	1	18134821	18146129	LSH