Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0406 ATGCTCTTGTTCCCTCCAATGCCAAAGATGCTTTCACGATCTCACAAAACCACACACCCTTCAATCTTCCTCTCACTAACCCACTCATTCTCATTCTCATCATCATCACCATCACCACCACCGTTACCGCCGCCGCATCCAGAAGACTCAGCCATTCTCCAAAGGCTCCACCACAAAGACTGGCTAACCCCTAAAGAAGTCACCACCGTCCTCAACAACCTCACCCACCATTCCTCCGCCCTCACCCTCCTCCACCTCTATTCCTCCCGCAAAGACTTCAACCTCACCGAGCCCTTCTGCATCTCCCTCATCACGCGCCTCGCACGCGCCAACCTTCTCCACCCCATTCAATCCCTTCTCCAAACCCTCGCACACGAGAAGAAACTCCGACGCTTCTCCGAAGGCTTCTTCTACACCATCATCAAGCTCTACGCGCATTCCCTCAACCGAATTGATAAAGCTGTGGATACCCTTTACGCTATGCCCAGGTTCCGTTGCGTGCCGAGCACGAAAACGTTTAATTTCGTGCTCAATTTGCTTGTTTCGGCGAAGGTTTACGATGTGGCGTACGAGGTTTATTCGTCGGCGGGGAGGCTGGGGGTTGAGGTGGATGCGTGTTGTCTGAATATTTTGATCAAAGGGTTGTGTGAGAGTGGGAAATTGGAAGCTGCATATAAGGTGTTCGATGAATTTCCCGAGAGCGGGTTGGAGAGAAATGCAAGGACTTTCGCGACGCTGATGGATGGTTTGTGCGAAAAAGGAAGGGTGGATGAGGCAATTGCACTTTTGGAGGTGATGGAGAGGAGCGGGGTTAGTGGCGATACGATTGTGTACAACGTGGTTATTAAGGGGTTGAGGAAGAAGGGGATGGTTGAGGAGGGGAAGGAGATGTTGGAGAAGATGATGAGGAGAGGGTGTTATCCTAATGGAAGTTCTTATCAAGAGGTTTTGTATGGGTTGCTTGATGCTGAGAGGTTTTCTGAGGCTAAGGATTTAATGGAGAGGATGGTTTTGAAGGAAGGGGTTAGTCCTAGTTTTGTGTCTTATAAGGTTATGATAAAGGGGCTGTGTAAGAGGAATTTGGTTGAGGATGTTGATTGGGCTGTAAGGCAGATGGTGCTGCAGGGTTTTGCTCCTAGGATGGGGATGTGGAAGCAGATTGTTAAGTGTATGGTTTCCCAGGAAATAACTTCCAATTGTGTTTCTGCTGAAGAGATTTTGGAGGATCTATGGCGCATGGATGTGGATACAGTACCAACTTCTCTGCCTTGCAATTGA 1278 0.4914 MLLFPPMPKMLSRSHKTTHPSIFLSLTHSFSFSSSSPSPPPLPPPHPEDSAILQRLHHKDWLTPKEVTTVLNNLTHHSSALTLLHLYSSRKDFNLTEPFCISLITRLARANLLHPIQSLLQTLAHEKKLRRFSEGFFYTIIKLYAHSLNRIDKAVDTLYAMPRFRCVPSTKTFNFVLNLLVSAKVYDVAYEVYSSAGRLGVEVDACCLNILIKGLCESGKLEAAYKVFDEFPESGLERNARTFATLMDGLCEKGRVDEAIALLEVMERSGVSGDTIVYNVVIKGLRKKGMVEEGKEMLEKMMRRGCYPNGSSYQEVLYGLLDAERFSEAKDLMERMVLKEGVSPSFVSYKVMIKGLCKRNLVEDVDWAVRQMVLQGFAPRMGMWKQIVKCMVSQEITSNCVSAEEILEDLWRMDVDTVPTSLPCN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0406 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Lal20g0406 425 Pfam PPR repeat family 274 320 IPR002885 -
Lal20g0406 425 Pfam PPR repeat family 204 251 IPR002885 -
Lal20g0406 425 Gene3D Tetratricopeptide repeat domain 300 376 IPR011990 GO:0005515
Lal20g0406 425 Gene3D Tetratricopeptide repeat domain 233 299 IPR011990 GO:0005515
Lal20g0406 425 Gene3D Tetratricopeptide repeat domain 47 232 IPR011990 GO:0005515
Lal20g0406 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Lal20g0406 425 Pfam PPR repeat 347 377 IPR002885 -
Lal20g0406 425 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 44 407 - -
Lal20g0406 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Lal20g0406 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Lal20g0406 425 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 44 407 - -
Lal20g0406 425 TIGRFAM PPR: pentatricopeptide repeat domain 207 239 IPR002885 -
Lal20g0406 425 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Lal20g0406 425 TIGRFAM PPR: pentatricopeptide repeat domain 242 274 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0406 166 412 Glycosyltransferase AT1G05670 25.101 7.14e-27 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0406 20 3267422 3268699 Lal20g0406 20 3267422 3268699 ECH