LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g1583	ATGAAGTTTGTGAATTACATATCACAATGGAGAAATGCAGCAAAGGAAGCATTGGATCACACTGCAATTACTCTTAAATTCCTCTGTTGGCTTCACGTTACTAACAACTATCTCTGTTCCCCAACTCATGTCTATGGGCCTAGTATGCTCCCAACCCTAAATCTCGCCGGGGATGTAATTCTCGCCGAGCACTTGTCGCCGCGCATCGGGAAGGTTGGCCACGGAGATTTAGTTGTGGTTCGATCTCCTTTCAACCCTAATCGGAACTTGACGAAGCGAATTGTGGGGATGGAAGGGGATACTGTTACTTTCTTTGATCCTTTGCGTGGTGATGCTACTCAAACTGTAGTGATATTAGAATGTTGCGATGATAAGATAGGATTACCAATGAATGAATTAGAGGTACCAAAGGGGCATGTTTGGATTCAAGGGGATAACATCTATGCTTCCCATGATTCGAGGCATTTTGGTCCTATTCCTTATGGTCTTATACAAGGAAAGGTGTTTTTCAGGGGATTAATGAATTTTGAGTTGCTTTGTATTTGGAAGTTTTATGGCGCCGATAGTTTAATCAGCTTATGGTCTGTATCCAGTAAAATGCTGGAACTATTCTTCCATGGAGGAGCTTCTGTGATTGCCATTGAAGTTGCAGTTTGCAAGGGCCTAATGACCCTAGTCCCTTTTGGCAGCAAACAAAAAATATAA	705	0.4241	MKFVNYISQWRNAAKEALDHTAITLKFLCWLHVTNNYLCSPTHVYGPSMLPTLNLAGDVILAEHLSPRIGKVGHGDLVVVRSPFNPNRNLTKRIVGMEGDTVTFFDPLRGDATQTVVILECCDDKIGLPMNELEVPKGHVWIQGDNIYASHDSRHFGPIPYGLIQGKVFFRGLMNFELLCIWKFYGADSLISLWSVSSKMLELFFHGGASVIAIEVAVCKGLMTLVPFGSKQKI	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g1583	234	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal1g1583	234	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal1g1583	234	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	135	154	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal1g1583	234	TIGRFAM	sigpep_I_bact: signal peptidase I	27	171	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Lal1g1583	234	PANTHER	PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN	6	173	-	-
	Lal1g1583	234	CDD	S26_SPase_I	40	168	IPR019533	GO:0004252\|GO:0006465
	Lal1g1583	234	Gene3D	Umud Fragment, subunit A	34	178	-	-
	Lal1g1583	234	SUPERFAMILY	LexA/Signal peptidase	37	171	IPR036286	-
	Lal1g1583	234	Pfam	Signal peptidase, peptidase S26	27	171	IPR019533	GO:0004252\|GO:0006465
	Lal1g1583	234	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	6	173	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g1583	Lal-Chr1	18218317	18223589	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g1583	49	171	MADS-box Gene Family	AT1G29960	46.774	7.76e-33	114

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g1583	1	18218317	18223589	Lal1g1583	1	18218317	18223589	ECH