Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1575 ATGCTCGAACCACGCGAATCTGATATACCTGTCCTGTTTCTGGTCCTGGTTGTACTTCCGTTGGTTGCTTACATCTTGCTTGGAAAATGGAGTGATACTACTAAGAAGAGAGATAAGATAATTTTGCTTGCCCAATTGGCTGCTGAAGAAGCTTTGAGATCAGAAGAAATGGCCGTTCCTGATGTAATTCATCCAGTTTCTTCTTTGAAGAGTGAACTTCCTCTCTGTGCCAGGTGCTCTGCTCCAGCGAAAACTCGCTGCTCCAGATGCAAGTGTGTCAGATATTGCTCTGGGAATTGTCAAATAATTCATTGGAGGCAAATTCACAAGCATGAATGCAAGCTACTGGAAACTGATAAATCAAGCTCGTTTCCTCTGCCTGTTTCAGTTGACGAATTTAGTCACGGGAATGGTTTTTATGACCATTTGAACAGCCAATTATTTGGTCATAATTTGAAGCCGACTTTAAGGGAGACTGCACCTCTGGATAATTTGATTCACCCTCTAACTTGTCCTGATGCTTCTGCTACATCAGATTTTTCCTTATTAAATTACTCTGAAGTCTCCACTTTTGAGAGAAGAACTTCCTTTAAATCCAAGCGAGGAACACAAAGAAGAGACAATGAGTCTATATGCGAATCTTCTATTGAATCTTCTGAATATGATAAGGCTACCAGTTCTCCCTCTTCAAGCGTGGTATCAAAGGAGTCAAGGAATAATGGCATTTCAAAGAAGGTCAATGCCAGTGGCGGCGGTGTGTACTTTTATGGACAAGATGGTTCAAGAAGCACAATCGTAGAGGATGGTAACTATCAAAGTCGGTATGGAAATGCGTTTATACCACGAAACAACGACGGATGGTCAAGTGTGTCAATTGAAGGAAATACTGATGAAAATGCATATGAATGTGACACAGACATCCTTACAAATGGAGGAAATGTAGTCAAAAGGGGAAATTGTCATTATGATGGAGCAGCCCAGTACAAATGCTCTTTTGACATGGCAGTTAAAGGAAGTGTGAAGGCTAAAAAGGCGTTACACCCTCCTAAGATCAGAAGTTCTAAATCGCCAAAGTCAACACCAAAGATTTCAACAGACTTTTGTTGCCCAGAAATAGAGAAAAAAGGGAAAATTGCAGATGAACCAAAAGTCTCTGAAATAAGAGATACCATCTCTTTACATGGTACCAGTGGGGATGCAAGCACTGGATTTATGAAAATGATGGGCTTGAGGAAATCAATAAAACTTACAGCACCAGTCTCTTCAGAAGGTAGTGGAGTAAGGTTTAAGAAGACGAAGAAGATGAAGATGTTGTTTCCTTATGAGGAGTTTGTACAGATTTTTCAGAGTGAAGTCTTTGGCTTATGTCCCAGGGGCCTTTTAAACTGTGGGAACAGTTGCTATGCCAATGCTGTCTTGCAGTGCTTAACTTCTACAAAGCCTCTTGTCGTCTATTTGTTTTGCCAATCACATTCAAAATCCTGTTGTGCTAGAGATTGGTGTCTCATGTGCGAGTTAGAGCAACACATAATGACTTTGAGAGAAAACGAGGTTCCTCAATCTCTTAGTAGGATACTTTGGCATATGCGGAGCATTAATTGCCACATGGGTGATGGAAGTCAGGAAGATGCACATGAATTTTTAAGGCTTCTAATTACATCAATGCAATCTATATGCTTGGAGGGACTTGGTGGTGAGAAAAAGGTTGATCCTAGACTACAGGAAACAACTTTCATACAATATACTTTTGGTGGTCGTCTTCAATCCAAGGTTAAGTGTTTAAATTGCAATCACGAGTCTGAAAGGTATGAGAACATTATGGATCTTACATTGGAGATATTGGGTTGGGTTGAGTCGCTGGAAGATGCACTGGCTCAGTTTACTTCCCCTGAAGATTTGGATGGTGAAAATATGTATAGATGTGGAAGGTGCACTTCATATGTTCGAGCTAGAAAGCAATTGAGCATACACGAGGCCCCTAACATTCTCACTATTGTTTTAAAGAGATTTCAGGAAGGAAGATATGGGAAAATTAACAAGTGCATAACTTTTCCTGAGATGTTGGATATGATCCCATTTATGACTGGGTCGGGTGATATTCCTCCACTTTACATGCTTTATGCTGTTGTTGTGCATCTGGACACGCAAAATGCATCTTTCTCCGGACATTATATTTCATATGTGAAAGATCTGCAAGGCAATTGGTACAGGGTAGATGATACTGAGGTTCAGCCAGTGCTAATTGATCAGGTGATGTCAGAAGGAGCCTATATCTTATTCTACTTGAGGTCTTGCCCCCGTCCTCCGGTAGAACTTAATGGGAAAGCCATGCAGCAATTGGTTCCCAAATCTTCAAAACACTACCCTGTGGAATTGCAGAAGCGTTCTAAATCAGGACATAGACATGAAAGTGACTTTGTTGTTCATGAACCTTCACCAATTGCCAGAACTACATACCCCAGTGACATCTGTAATGGCAGCTACCTTAGAAGAAGTACTGCCAATAGAAACGTCCTGCCATTTACGCAAACATATGCCCAAAACATCCAACACGAGTTTTCAGACGCCGTGTCAAGTGACTGGTCCGTTTTCACAAGCTCGGATGAGGCTTCTTTCACAACTGAGAGTACCAGGGACTCCTTCAGTACTGTTGACTATGGTGATTCTTGCAATATGGACACAATTTCATCCATCTTCAATTATTCCAGAGAAAACTCCTACAACAAGTTTTCACATGGTAAACCACTTACCAGGTTCTTCCCTCAAAAGGGTCATATTGAAAGAGTACAAAGAATTGATCAAGAGTCTAAAAATGCCACTCATTCTTCAATTGAACATTCATCATATGGTAATGGTGGCATTTATGTACATTTTGGAAGCAACCCTTTGAATGATATTACCTCAGTGTGA 2910 0.4079 MLEPRESDIPVLFLVLVVLPLVAYILLGKWSDTTKKRDKIILLAQLAAEEALRSEEMAVPDVIHPVSSLKSELPLCARCSAPAKTRCSRCKCVRYCSGNCQIIHWRQIHKHECKLLETDKSSSFPLPVSVDEFSHGNGFYDHLNSQLFGHNLKPTLRETAPLDNLIHPLTCPDASATSDFSLLNYSEVSTFERRTSFKSKRGTQRRDNESICESSIESSEYDKATSSPSSSVVSKESRNNGISKKVNASGGGVYFYGQDGSRSTIVEDGNYQSRYGNAFIPRNNDGWSSVSIEGNTDENAYECDTDILTNGGNVVKRGNCHYDGAAQYKCSFDMAVKGSVKAKKALHPPKIRSSKSPKSTPKISTDFCCPEIEKKGKIADEPKVSEIRDTISLHGTSGDASTGFMKMMGLRKSIKLTAPVSSEGSGVRFKKTKKMKMLFPYEEFVQIFQSEVFGLCPRGLLNCGNSCYANAVLQCLTSTKPLVVYLFCQSHSKSCCARDWCLMCELEQHIMTLRENEVPQSLSRILWHMRSINCHMGDGSQEDAHEFLRLLITSMQSICLEGLGGEKKVDPRLQETTFIQYTFGGRLQSKVKCLNCNHESERYENIMDLTLEILGWVESLEDALAQFTSPEDLDGENMYRCGRCTSYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMIPFMTGSGDIPPLYMLYAVVVHLDTQNASFSGHYISYVKDLQGNWYRVDDTEVQPVLIDQVMSEGAYILFYLRSCPRPPVELNGKAMQQLVPKSSKHYPVELQKRSKSGHRHESDFVVHEPSPIARTTYPSDICNGSYLRRSTANRNVLPFTQTYAQNIQHEFSDAVSSDWSVFTSSDEASFTTESTRDSFSTVDYGDSCNMDTISSIFNYSRENSYNKFSHGKPLTRFFPQKGHIERVQRIDQESKNATHSSIEHSSYGNGGIYVHFGSNPLNDITSV 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1575 969 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Lal1g1575 969 MobiDBLite consensus disorder prediction 214 243 - -
Lal1g1575 969 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 922 - -
Lal1g1575 969 CDD Peptidase_C19E 457 762 - -
Lal1g1575 969 Pfam Ubiquitin carboxyl-terminal hydrolase 459 761 IPR001394 GO:0004843|GO:0016579
Lal1g1575 969 MobiDBLite consensus disorder prediction 196 243 - -
Lal1g1575 969 SUPERFAMILY Cysteine proteinases 455 764 IPR038765 -
Lal1g1575 969 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 458 764 IPR028889 -
Lal1g1575 969 Gene3D Cysteine proteinases 455 768 - -
Lal1g1575 969 MobiDBLite consensus disorder prediction 196 213 - -
Lal1g1575 969 SUPERFAMILY HIT/MYND zinc finger-like 72 116 - -
Lal1g1575 969 Pfam MYND finger 76 113 IPR002893 -
Lal1g1575 969 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 459 474 IPR018200 GO:0004843|GO:0006511
Lal1g1575 969 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Lal1g1575 969 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 20 922 - -
Lal1g1575 969 Gene3D - 66 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1575 Lal-Chr1 18134821 18146129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1575 433 771 Miscellaneous Gene Families AT4G31670 53.179 3.85e-123 387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1575 1 18134821 18146129 Lal1g1575 1 18134821 18146129 ECH
Lal20g0414 20 3320014 3328842 Lal1g1575 1 18134821 18146129 LSH