Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1573 ATGGCTGCGGTTGCTGAGATTTCTGCTGATGCAACCAACACAATGGACTCAAAACCAAAGCCAGATTCTGAATTCAGTGTGCAGAATCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCAAAAGAGTTTTTCCCTTCATCATATCATTCTCAAAATCATGATCATTTGTATCAGGGCTTTAATCAGTTCTCACAGACCAATTTTCTGATCAACACTAAGCCCTTGGCTAATGATAATTACCCTAACAGAAGGAGAAGAAATAGTTTTAACCAGGGAAGAATGTCGAATGGAAGATCACTTAAGGCTCAGAGAGAAGATAGCGTTAGAAGAACAGTGTATGTTTCTGATATTGATCAGCAGGTTACCGAGGAGCGGCTTGCTGCCTTATTCAGCAATTGTGGACAAGTAATCGATTGCCGAATTTGTGGTGATCCACACTCAGTTCTTCGTTTTGCTTTTGTTGAGTTTTCAGATGAGTATGGTGCAAGAACAGCTTTAAACCTCGGTGGCACTATGCTAGGCTTCTATCCTGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTCCCCGTGAATCCTACATTCCTCCCTAGGTCGGTTGATGAGCGGGAAATGTGTGCCAGAACTGTCTATTGTACCAATATTGATAAAAAGGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAATTTGTGGCGAGGTTACGCGCTTGAGGCTTTTAGGGGACCAGGTGCACTCAACTCGAATCGCTTTTGTGGAATTTGCAATAGCAGAGAGTGCCATTCTTGCACTAAACTGCAGTGGAATGCTCTTAGGAACCCAACCTATCAGGGTAAGTCCTTCAAAAACTCCTGTGAGGCCAAGGGTCATTCATCCAACATCACTTTAA 891 0.4242 MAAVAEISADATNTMDSKPKPDSEFSVQNLVDMFTKLNPLAKEFFPSSYHSQNHDHLYQGFNQFSQTNFLINTKPLANDNYPNRRRRNSFNQGRMSNGRSLKAQREDSVRRTVYVSDIDQQVTEERLAALFSNCGQVIDCRICGDPHSVLRFAFVEFSDEYGARTALNLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSVDEREMCARTVYCTNIDKKVSQAEVKNFFESICGEVTRLRLLGDQVHSTRIAFVEFAIAESAILALNCSGMLLGTQPIRVSPSKTPVRPRVIHPTSL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1573 296 Gene3D - 196 289 IPR012677 -
Lal1g1573 296 Gene3D - 73 187 IPR012677 -
Lal1g1573 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 186 IPR000504 GO:0003723
Lal1g1573 296 SUPERFAMILY RNA-binding domain, RBD 199 289 IPR035979 GO:0003676
Lal1g1573 296 SMART rrm1_1 209 280 IPR000504 GO:0003723
Lal1g1573 296 SMART rrm1_1 112 182 IPR000504 GO:0003723
Lal1g1573 296 Pfam Ataxin-2 C-terminal region 33 48 IPR009818 -
Lal1g1573 296 CDD RRM2_CID8_like 204 285 IPR034825 -
Lal1g1573 296 MobiDBLite consensus disorder prediction 75 99 - -
Lal1g1573 296 MobiDBLite consensus disorder prediction 75 104 - -
Lal1g1573 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Lal1g1573 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 277 IPR000504 GO:0003723
Lal1g1573 296 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 294 - -
Lal1g1573 296 SUPERFAMILY RNA-binding domain, RBD 88 187 IPR035979 GO:0003676
Lal1g1573 296 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 294 - -
Lal1g1573 296 MobiDBLite consensus disorder prediction 1 22 - -
Lal1g1573 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 284 IPR000504 GO:0003723
Lal1g1573 296 CDD RRM1_CID8_like 109 188 IPR034823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1573 Lal-Chr1 18110402 18115560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1573 108 265 Eukaryotic Initiation Factors Gene Family AT1G34140 27.329 4.48e-12 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1573 1 18110402 18115560 Lal1g1573 1 18110402 18115560 ECH