Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1566 ATGGGATCCTCACCTCAAATAAAACGCGGTAGAAGCAAAAAAACACTCCACAAATCAGAAAGGGAAAATAATCGTGTGAAGCTTGCGCGGGATGCGATTTACGTGGTGGCGGTGCTCACCAGGGTCCAATGCACCGAATCACGCGGCGGCGGAAGTTTATTGTTGCCGTCGTCGCCACCGTTGATGGCCTTGCAGATGACGTGGCAGCCGAGCCTCCTCAGTGATAAACGCAAAACCGGTCCTCCTTTAGGGCTCAGAAATCTCGGCAACTCTTGTTATCTCAATTCCGTTCTTCAGTGCCTTACCTATACTCCTCCTCTCGCTAATTTCTGCCTCCGATTTCAACATTCCTCTCTCTGTGATTCTGCTGCTGCTTCTTCTTGCCCCTTCTGTATACTCGAGAAGCAAATTGCACGCTCCCTGCGCGTGGATCTCACGCACGACGCTCCTTCAAAGATCCAGAACTGTCTGCGGATCTTTGCCGAACACTTTCGTTGTGGCCGCCAGGAGGACGCGCATGAGTTCCTCCGTTATGTGATTGATGCGTGTCACAACACCTGCCTCCGACTCAAGAAGCTCCGCCGCAAAGGTGGTGTTGGTGATGGTGTTGGTGGTAGTGGTGGTGGTGGTGGGAGCTCGATTGTGAAGGAGATTTTTGGCGGAGCGTTGCAGAGTCAGGTGAAGTGTTTGAATTGTGGATATGAGTCAAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTCCATAGTAACTCGCTTAGAGACTCCATGCAAAAATTCTTTCAGCCTGAGGTTTTAGATGGCAACAATAAGTATAAGTGTGATAGTTGTAAAAAGTTGGTTGCTGCTAAAAAGCAGATGAGTATACTTCAAGCACCTAATGTCCTTGTGATACAACTGAAGAGATTTGAGGGCATATTGGGTGGTAAGATTGATAAGGCTGTTGCATTTGAAGAATTTTTGGTGCTTTCGAGCTTCATGTGCAAAGCAAGCCAGCCATGGCGGCTGGCGGTGACAGTTTTCAGGCTGGCTGCCTTTTGCCATCTGATATATGGCCATTTGAGGATTTCGAGCTGCCATGGCGTTGGCGGATTCTTTCTTCTGATTGCTTTTTGTTACAATGACAATGTTGTTTGCCTTGTAACCTTGAGGTCACGAGTTCAAATTCTGGAAACAGCCTATTCGTTTGTGATCGTTTGTGAGGGTATAGTTGCACACATGATTAGGGATGGCAATGGGTACCTGCAACGGGATCCACTACCTGAATATAAGCTCTTTGGTACTATTGTGCATTCTGGCTACTCCCCAGAATCTGGTCATTATTATGCTTATATAAAGGATGCAATGGGTCGGTGGTATTGCTGCAACGATTCTTGTGTAACACTTGCAACACTGCAAGAAGTTTTGTCTGAAAAGGTTTATATTCTTTTTTTCTCTCGAATTAACCAAAGGCCAGCGCCAATTAATAAGGCTTCTGCTTCAAATGGTGGAAAGCCTCATCATTCCAATGGGAGTCAGGCATCCGACTGCCCAAAGGTTGATGTACCACCGAAAGCAGTGCGTGCAAAATCAATTTCTGAGCAATCTCAAAGGAAGGATATGGCAAGCATATCTAAGATTGGTAAAGTTCCTTCCAACTCACGAGTGAAGTTTGACATCAACGGAAATTCTAGTTCCAAAAGAGTTCTTGCTTCTGCAAGTGTGAACGGGAAAGATGTAGTTTCTAAGAATCAGCCATTAGCAATAAATGGGCATGTTAAAGTGTCAATTTCTTTGGAGAATGGTAAGAAAGATCCTTCTTCACTACCAACCAGTAATGGCTTTGAGAAAAATAAAGTTGATGTTGCTGACAACTCGAAAAGAAAGGAGGCAATGTTAACAAACGGATACACTGATATTCAAAAAGTTGATATCCATTCTGTAAAATCAAATCCTATGGAGGACACTGATAGAAGCAGGGTAATAATGGTTAGAGGGCCTGACACCTTTAAGCAAGAAAGCAATGGCATCAACAACAAACCTAAAATATTGGGGAATAAGAGAAAAATACAGGAGGCTCCGTGCATTTTGCTCGCACAAGACATTCAATCTAGAACAAGAGTTGAAGAACTAAAGAACATTCTTGGGAAAGAGGCAAAGTCTGTTTTGATTTCATGTGGCTGGACAGATATGGTCTATGACTTCATGCGTTCTAGAAAGAGGCTGGGCACACAAGAAGCTGAAAATTTAACCTGTGGAGATGAAACAAAGAAGTCATTAATAGGAGATGCAAAGGGTGCTTTCTTATCCAAAATTCCCGAGTCTTTGAGAAAGGATATGATCGAACGTCTCCGATTGTTTAGCGAAGAAAAAAGTACAATTTGA 2370 0.4376 MGSSPQIKRGRSKKTLHKSERENNRVKLARDAIYVVAVLTRVQCTESRGGGSLLLPSSPPLMALQMTWQPSLLSDKRKTGPPLGLRNLGNSCYLNSVLQCLTYTPPLANFCLRFQHSSLCDSAAASSCPFCILEKQIARSLRVDLTHDAPSKIQNCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGVGDGVGGSGGGGGSSIVKEIFGGALQSQVKCLNCGYESNKVDEIMDISLDVFHSNSLRDSMQKFFQPEVLDGNNKYKCDSCKKLVAAKKQMSILQAPNVLVIQLKRFEGILGGKIDKAVAFEEFLVLSSFMCKASQPWRLAVTVFRLAAFCHLIYGHLRISSCHGVGGFFLLIAFCYNDNVVCLVTLRSRVQILETAYSFVIVCEGIVAHMIRDGNGYLQRDPLPEYKLFGTIVHSGYSPESGHYYAYIKDAMGRWYCCNDSCVTLATLQEVLSEKVYILFFSRINQRPAPINKASASNGGKPHHSNGSQASDCPKVDVPPKAVRAKSISEQSQRKDMASISKIGKVPSNSRVKFDINGNSSSKRVLASASVNGKDVVSKNQPLAINGHVKVSISLENGKKDPSSLPTSNGFEKNKVDVADNSKRKEAMLTNGYTDIQKVDIHSVKSNPMEDTDRSRVIMVRGPDTFKQESNGINNKPKILGNKRKIQEAPCILLAQDIQSRTRVEELKNILGKEAKSVLISCGWTDMVYDFMRSRKRLGTQEAENLTCGDETKKSLIGDAKGAFLSKIPESLRKDMIERLRLFSEEKSTI 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1566 789 Pfam Ubiquitin carboxyl-terminal hydrolase 84 480 IPR001394 GO:0004843|GO:0016579
Lal1g1566 789 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 84 99 IPR018200 GO:0004843|GO:0006511
Lal1g1566 789 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 74 331 - -
Lal1g1566 789 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 425 518 - -
Lal1g1566 789 CDD Peptidase_C19E 82 481 - -
Lal1g1566 789 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 425 443 IPR018200 GO:0004843|GO:0006511
Lal1g1566 789 MobiDBLite consensus disorder prediction 490 511 - -
Lal1g1566 789 MobiDBLite consensus disorder prediction 490 541 - -
Lal1g1566 789 SUPERFAMILY Cysteine proteinases 79 487 IPR038765 -
Lal1g1566 789 MobiDBLite consensus disorder prediction 1 22 - -
Lal1g1566 789 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 425 518 - -
Lal1g1566 789 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 74 331 - -
Lal1g1566 789 Gene3D Cysteine proteinases 77 484 - -
Lal1g1566 789 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 83 483 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1566 Lal-Chr1 18020749 18028090 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1566 425 488 Miscellaneous Gene Families AT4G31670 43.939 5.30e-09 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1566 1 18020749 18028090 Lal1g1566 1 18020749 18028090 ECH