Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1565 ATGCTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTAGCTTCCCCTATGAGTTTGGGGAACCTAATGTATGTGAGTTCTTCAAGAAGGTCTCATTCTACTGTGAGGAGAGTGTCTTTCTCTAGAGGGAGCTCTAAGGGTAAGAAGAATTGGCATTGTGTGTCTTTATCTGTGTGTAGATGTTCGGTTACGGCAACTGATTTTGTTGCTGATCAAGGAAATTCAGTTTCCCTTGATTCTAACAGTAGTAGAGAAAGTAGTAATAAGGGTGGAGATGGTGGTGCTGATTTTGTACTTAAGCCTCCCCCTAAGCCTGTTTTGAAGTCCTTGGGTGGGAAGGGTAATGCAATTTTAGGCGTGAACTCGAGGAATAGTGAGGTGGGTGGAGATGTGGAAGAGAGGAACAATGTGATTGAATCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAGCTGGGGAATAATAATCCTAAGTTGGATGATGCTAAAAGGAATAACGGGTCGGTGAATAAACCAGTGTTATCTAATGTCAATGCTAATCCTAGAGCTGATAAAACGGTAAATTCAACAAAAAACCAGAAGGCCAAGACTTCGAAAAGTGTGTGGCGTAAAGGGGATACAGTTTCAACTGTGCCGAAGGTTGTGAAGGAAGTACCTAAGCCTAGTAGTAACCAGAATGGAAGGGAGGAATCTCAAATTGGGGGACGGGAGAAGGTACTAGCATCTCAATCTCGCACTCCTCAGCTACCTCCGAAACCTCAACCGAAATTACAAACAAGACCTTCTATAGCTCCCCCGGCTCCACCACCTGTGAAAAAGCCTGTTGTCTTGAAGGACACTGGGGCAGCTGACAAACCGGTAAAATCTAAAGAAAGGAAGGGACCCATCTTGATTGACAAATTTGCTTCCAAGAAACCAGTTGTTGATCCTGTAATTGCTCAAGCCGTTCTTGCCCCTCCAAAACCAGGGAAGGCCCCTCCACCAGGAAAGTTTAAAGACGATTACCGGAAGAAAGGTGCTCCGGCTGGGGGTGGAGCAAGAAGACGAAAACTTGACAATGCCATTCCCGATGATGACACGTCAGAATTGAATGTCTCTATTCCTGGGGCTGCAAGAAAAGGACGGAAATGGAGTAAAGCAAGTCGTAAGGCAGCAAGACTCCAGGCTGCCAGAGATGCAGCTCCTGTCAAAGCAGAAATTCTAGAGGTTAGTGATAAAGGTATGCTGGTGGAGGAGTTGGCCTACAACTTGGCGATCGGTGAAGGTGAAATCCTCGGTTCTCTATACTCCCGGGGGATTAAACCAGATGGGGTACAAACTCTGGACAAAGATATGGTGAAGATGATTTGTAAAGAATATGATGTGGAAGTCATAGATGCTGACCCTATCAAAGTTGAAGCATTGGCAAAGAAAAGGGAAATCCTTGATGAAGATGACCTTGACAAACTCAAAGATAGGCCTCCTGTCATTACTATCATGGGCCATGTAGATCATGGCAAAACAACACTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCCGGTGGGATCACACAGGGAATTGGTGCTTATAGAGTGCAAGTACCTTTTGATGGCAAACAATTGCCTTGTGTTTTCCTTGATACTCCTGGGCATGAGGCATTTGGGGCAATGAGGGCTCGCGGAGCAAGCGTAACAGATATTGCTATCATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAATCAAACGAAGCAATAGCTCACGCCAAAGCAGCAGGAATAGATAAAAATGGAGCAAATCCAGACCGAGTCATGCAAGAGCTTTCTTCAATTGGTCTAATGCCTGAAGATTGGGGTGGTGATGTCCCAATGGTCCAGATAAGTGCTCTTAAAGGGGAGAATGTAGATGATCTCTTGGAAACTATTATGCTTGTTGCTGAGTTGCAAGAGCTGAAAGCTAATCCTAATAGAAGTGCAAAGGGTACAGTCATTGAGGCAGGTCTAGATAAATCAAAAGGACCATTTGCTACTTTTATCGTGCAGAATGGCTCCCTTAAAAGGGGAGATATAGTCGTTTGTGGAGAAGCTTTTGGAAAGGTTCGGGCTTTATTTGACGATGGTGGAAAGCGTGTTGATTTAGCTACGCCTTCTATGCCTGTACAGATTATTGGATTGAATAATGTTCCACATGCTGGTGATGTATTTGAGGTTGTCGAATCCCTCGACGCTGCACGTGAAAGAGCAGAGTCCCGTGCTGAGTCATTGCGAAATGAGCGTATTTCGGCAAAGGCTGGGGATGGCAAGGTCACCCTTTCCTCCTTAGCTTCTGCGGTTTCATCGGGAAAGCTATCTGGACTAGACTTGCACCAACTAAATATTATCTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAGACAAGCGCTGCAGGTGTTACCACAAGATAATGTCACATTGAAGTTTTTGTTGGAAGCTACAGGTGATGTAAACACAAGTGATGTTGACCTCGCAACCGCAAGCAAAGCTATTATTTTTGGATTTAATGTCAAAGCACCAGGCTCTGTGAAAAGCTATGCGGAGAATAAACTTGTTGAGATTAGATTATACAGAGTTATTTACGAATTAATTGACGATGTGCGAAATGCAATGGAAGGACTCTTGGATCTTGTTGAGGAACAAATACCAATTGGCTCAGCGGAAGTACGGGCCACATTCAGCAGTGGTAGTGGTCGTGTTGCGGGATGCATGGTTACAGAGGGAAAGATGACAAAAGATTGTGGTATTCGTGTCATTCGGAAGGGAAAAGTAATCCATGTTGGCGTTCTTGATTCTTTGAGACGAGTGAAGGAAATGGTTAAAGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGATTAGAAGATTACGATGATTGGGAAGAGGGTGACCGAGTCGAAGCCTTCAATAAAGTTCAGAAGAAGCGAACACTCGAAGAAGCCTCGGCATCAATGGCAGCTGCTGTAGAAGGAGTAGGAGCTTGA 3015 0.4464 MLILVGNVQGTMSSLASPMSLGNLMYVSSSRRSHSTVRRVSFSRGSSKGKKNWHCVSLSVCRCSVTATDFVADQGNSVSLDSNSSRESSNKGGDGGADFVLKPPPKPVLKSLGGKGNAILGVNSRNSEVGGDVEERNNVIESLGEVLEKAEKLGNNNPKLDDAKRNNGSVNKPVLSNVNANPRADKTVNSTKNQKAKTSKSVWRKGDTVSTVPKVVKEVPKPSSNQNGREESQIGGREKVLASQSRTPQLPPKPQPKLQTRPSIAPPAPPPVKKPVVLKDTGAADKPVKSKERKGPILIDKFASKKPVVDPVIAQAVLAPPKPGKAPPPGKFKDDYRKKGAPAGGGARRRKLDNAIPDDDTSELNVSIPGAARKGRKWSKASRKAARLQAARDAAPVKAEILEVSDKGMLVEELAYNLAIGEGEILGSLYSRGIKPDGVQTLDKDMVKMICKEYDVEVIDADPIKVEALAKKREILDEDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYRVQVPFDGKQLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQSNEAIAHAKAAGIDKNGANPDRVMQELSSIGLMPEDWGGDVPMVQISALKGENVDDLLETIMLVAELQELKANPNRSAKGTVIEAGLDKSKGPFATFIVQNGSLKRGDIVVCGEAFGKVRALFDDGGKRVDLATPSMPVQIIGLNNVPHAGDVFEVVESLDAARERAESRAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRQALQVLPQDNVTLKFLLEATGDVNTSDVDLATASKAIIFGFNVKAPGSVKSYAENKLVEIRLYRVIYELIDDVRNAMEGLLDLVEEQIPIGSAEVRATFSSGSGRVAGCMVTEGKMTKDCGIRVIRKGKVIHVGVLDSLRRVKEMVKEVNAGLECGLGLEDYDDWEEGDRVEAFNKVQKKRTLEEASASMAAAVEGVGA 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1565 1004 Coils Coil 736 763 - -
Lal1g1565 1004 Pfam Elongation factor Tu GTP binding domain 491 642 IPR000795 GO:0003924|GO:0005525
Lal1g1565 1004 MobiDBLite consensus disorder prediction 249 274 - -
Lal1g1565 1004 CDD IF2_eIF5B 489 646 - -
Lal1g1565 1004 Gene3D Translation factors 890 987 - -
Lal1g1565 1004 MobiDBLite consensus disorder prediction 328 342 - -
Lal1g1565 1004 MobiDBLite consensus disorder prediction 160 197 - -
Lal1g1565 1004 CDD IF2_mtIF2_II 657 751 IPR044145 -
Lal1g1565 1004 Pfam Translation-initiation factor 2 785 878 IPR023115 -
Lal1g1565 1004 Gene3D Translation factors 653 769 - -
Lal1g1565 1004 TIGRFAM small_GTP: small GTP-binding protein domain 488 640 IPR005225 GO:0005525
Lal1g1565 1004 MobiDBLite consensus disorder prediction 75 107 - -
Lal1g1565 1004 PANTHER TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 42 996 - -
Lal1g1565 1004 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 42 996 IPR015760 -
Lal1g1565 1004 ProSitePatterns Initiation factor 2 signature. 939 961 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lal1g1565 1004 MobiDBLite consensus disorder prediction 319 364 - -
Lal1g1565 1004 Gene3D - 483 652 IPR027417 -
Lal1g1565 1004 CDD mtIF2_IVc 896 978 - -
Lal1g1565 1004 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 486 650 IPR000795 GO:0003924|GO:0005525
Lal1g1565 1004 SUPERFAMILY Translation proteins 653 737 IPR009000 -
Lal1g1565 1004 MobiDBLite consensus disorder prediction 154 294 - -
Lal1g1565 1004 PRINTS GTP-binding elongation factor signature 490 503 IPR000795 GO:0003924|GO:0005525
Lal1g1565 1004 PRINTS GTP-binding elongation factor signature 542 552 IPR000795 GO:0003924|GO:0005525
Lal1g1565 1004 PRINTS GTP-binding elongation factor signature 558 569 IPR000795 GO:0003924|GO:0005525
Lal1g1565 1004 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 784 896 IPR036925 -
Lal1g1565 1004 TIGRFAM IF-2: translation initiation factor IF-2 407 988 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lal1g1565 1004 MobiDBLite consensus disorder prediction 75 91 - -
Lal1g1565 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 653 IPR027417 -
Lal1g1565 1004 Hamap Translation initiation factor IF-2 [infB]. 7 986 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Lal1g1565 1004 SUPERFAMILY Translation proteins 893 986 IPR009000 -
Lal1g1565 1004 Gene3D - 785 888 IPR036925 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1565 Lal-Chr1 18009674 18018030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1565 487 692 Eukaryotic Initiation Factors Gene Family AT1G76810 33.080 1.79e-22 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1565 1 18009674 18018030 Lal1g1565 1 18009674 18018030 ECH