Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1559 ATGGCCGTTGAAGCTCACAATCTCAACCTTTTATCTCTTCAACTCAGAAACAACAATAGAGAAATGATGAACCCTATTGATACTAATATCAACATTTACAACACAACCCAATTTGATTACCCTTCAGTACTTCCATTATCTGGCACCACAACCACCACCGAGAATGTTTTCCGGCCACCGTACAGTACCTTAAAATCTAATACCAGCCTCACCTATAATGTTCCTTTATCAAGAAAACGTTCAAGGGAAAACTCAAATACATTCAACTATCCTTACACAACCACCACCACCCAAAATCACAACAAGAGTAATTGTAGCTCTTTCTCATTCCTCGGTGAAGATCTTTCTCTCCAGTTCCAGCAACAACAACTTGATATCAATAACATCATTTCTGAACGTTTGGAGAAAGTAAGGGTTGAGATAGAGGAAAAAAGAAAGAGACAATTAAGGAAAATAATGGAAGCAATTGAAGTTGGTGTAATGAAAAGACTAAAAACAAAGGAAGATGAGATAGAGAAAATTGGAAAACTAAATTGGACTTTAGAAGAAAAAGTCAAATCTCTTTGCATAGAGAATCAAATATGGCGTAATTTAGCACAAACCAATGAAGCCACAACCAATGCTCTCCGTATCGAATTGGAACGAGTACTCACCCACCGTGCTGGCGGTGATGAAACCGGAGCCACCGTGTCCCGCGGCGGAGCAGCCGCAGCAGTTATGGACGATGCAAGTTCGTGTTGTGGTAGCACCGACGGTGAAGACAAGAAAAAAGATAGTGAAGGAGTGTGGCGCACGATAATGGGATGCGCAGGGGTTAAGGATAAGGATTGTAATGGTAAGGGTATAATTGGAAAAAGTGTTGATAATATTAGATTATGCAGAAACTGTGGGAAAGAAGAATCGTGTGTGCTTATCTTGCCATGTAGGCATTTATGTTTGTGTAATATTTGTGGTTCCAGTCTTCATAATTGTCCCATTTGTAAATCTTTTAAGAATGCTAGTGTTCATATTAACATGTCCTAG 1023 0.3949 MAVEAHNLNLLSLQLRNNNREMMNPIDTNINIYNTTQFDYPSVLPLSGTTTTTENVFRPPYSTLKSNTSLTYNVPLSRKRSRENSNTFNYPYTTTTTQNHNKSNCSSFSFLGEDLSLQFQQQQLDINNIISERLEKVRVEIEEKRKRQLRKIMEAIEVGVMKRLKTKEDEIEKIGKLNWTLEEKVKSLCIENQIWRNLAQTNEATTNALRIELERVLTHRAGGDETGATVSRGGAAAAVMDDASSCCGSTDGEDKKKDSEGVWRTIMGCAGVKDKDCNGKGIIGKSVDNIRLCRNCGKEESCVLILPCRHLCLCNICGSSLHNCPICKSFKNASVHINMS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1559 340 Pfam Zinc finger, C3HC4 type (RING finger) 291 329 - -
Lal1g1559 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 339 IPR017066 -
Lal1g1559 340 ProSiteProfiles Zinc finger RING-type profile. 293 328 IPR001841 -
Lal1g1559 340 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 339 - -
Lal1g1559 340 Coils Coil 127 151 - -
Lal1g1559 340 PIRSF SBP1_RNase_bind 1 340 IPR017066 -
Lal1g1559 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 340 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1559 Lal-Chr1 17947758 17950246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1559 289 329 Miscellaneous Gene Families AT4G39050 39.024 9.07e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1559 1 17947758 17950246 Lal1g1559 1 17947758 17950246 ECH
Lal1g1559 1 17947758 17950246 Lal1g0633 1 4087419 4088829 PCT
Lal1g1559 1 17947758 17950246 Lal2g0684 2 4170374 4171868 PCT
Lal1g1559 1 17947758 17950246 Lal9g0594 9 4000268 4001459 PCT
Lal1g0633 1 4087419 4088829 Lal1g1559 1 17947758 17950246 PCT
Lal2g0684 2 4170374 4171868 Lal1g1559 1 17947758 17950246 PCT
Lal9g0594 9 4000268 4001459 Lal1g1559 1 17947758 17950246 PCT