Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1556 ATGGGTGTTAATGAAGATTTCATGAAGAATGATGAGTATGTAGACGGTGAAGTTCCACTTCCAGGGTTTCGGTTTCATCCCACAGATGAAGAACTTGTTAGTTTCTATCTTCAAAGGAAGCTTGATGAGAAACCCATTAGTATTGAACTTATCAAGGAGATTGATATCTATAAACATGATCCTTGGGATCTTCCAAAAGCTAGTGGTAATGGAGGAGAAAAGGAAGGGTACTTCTATTGTCAAAGAGGGAGGAAGTATAGGAACAGCGTAAGACCGAACAGGGTCACAGGCTCGGGGTTTTGGAAAGCAACAGGAATCGACAAACGAGTATATTCACACGGAGGAGAAGGCAATGAGTGCATTGGACTCAAGAAAACTCTTGTTTACTATTGTGGCAGTGCAGGCAAAGGTACCAAAACTGATTGGATGATGCATGAGTTTCGGCTTCCCTCCAATCATAATACCAAGATTAATGCTGATATTGCCCAAGAAGCTGAAATTTGGACACTGTGTAGGATTTTTAAAAGAAATGTGTCACAAAGAAAACACATGCCAAACATAAGAACACATTCAGCTTCTAAATGTCAAAACAATATTGACATAAGCACTAGAAAGAGCACTGAGGAATCTACTAACACTAATGAAGAAGCATATATCAATTTTGGTGCAAGTGTTGGGCATTATCAGAATGAGCAAAAACATGTTATTAACTATCCTAGGAATCAGTTAAGTTCTTCGGTGGCACAACAATCTCTAGTAACTGCACCATCTTCTAACTTCTGGATTAACCTTGCTGTGACTAATAATGACTTATTTACATTTGAGAATTGGGATGAGCTTGGATCTGTGGTGAAGTTTTGTGTTGATTCGCCTAGCTTGTAA 882 0.3889 MGVNEDFMKNDEYVDGEVPLPGFRFHPTDEELVSFYLQRKLDEKPISIELIKEIDIYKHDPWDLPKASGNGGEKEGYFYCQRGRKYRNSVRPNRVTGSGFWKATGIDKRVYSHGGEGNECIGLKKTLVYYCGSAGKGTKTDWMMHEFRLPSNHNTKINADIAQEAEIWTLCRIFKRNVSQRKHMPNIRTHSASKCQNNIDISTRKSTEESTNTNEEAYINFGASVGHYQNEQKHVINYPRNQLSSSVAQQSLVTAPSSNFWINLAVTNNDLFTFENWDELGSVVKFCVDSPSL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1556 293 SUPERFAMILY NAC domain 13 176 IPR036093 GO:0003677|GO:0006355
Lal1g1556 293 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 245 - -
Lal1g1556 293 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Lal1g1556 293 Gene3D NAC domain 28 180 IPR036093 GO:0003677|GO:0006355
Lal1g1556 293 ProSiteProfiles NAC domain profile. 19 176 IPR003441 GO:0003677|GO:0006355
Lal1g1556 293 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 11 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1556 Lal-Chr1 17889306 17892949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1556 17 185 NAC Transcription Factor Family AT5G39820 56.915 2.18e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal1g1556 NAM 1.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1556 1 17889306 17892949 Lal1g1556 1 17889306 17892949 ECH