Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1503 ATGTCTCCACAAAGTATAGTTCTTTCACTTTTCATTGTGTTCCTCTCATTTGGTTTGTGCTTTGGCTTTTACACAGAGGACAAATATAATCAAACAAATTATAAATATTACACTGGACCTAGAAGGTTGATGAAGCAACAACATGAACACTTTGGTATCATGAGAAGAACTCATAGGTCTCAAGGAAGTGTTAATGTTGATGACTATGGAGCAATAGCTAATGATGGAAAAGATGATACTAAGGCATTTGAGAAGGCATGGAATGAAGCATGTTCAAAAGGGTATATTCTTGTGGTACCAAAAAATTTTGTCTATTATTTGAAGCCTATAACATTTTCAGGTCCATGCAAACCAAATACAGCATTTAAGGTCTATGGAACAATCAAAGCATGGCCTCATATGTCAGCATATGAAAAAGATAGACGGCTATGGATTATGTTTGATAATGTATCGAATTTCGCGGTTGATAGCGGCGGTGTCATCGATGGTAATGGTAGGAAATGGTGGCAGAACTCTTGCAAAGTTAACAAAAGCCTTCCATGCAAAGATGCACCAACTGCTGTGACTTTCTCTCAATGCAACAACTTGAATGTGACAAACCTGAAGTTCAAAAATGCACAACAAATGCATGTTAGGTTCCAAAGTTGTTTCAATGTTACAGCTTCAAATTTAGTTATCACAGCACCAGGGAACAGTCCTAATACAGATGGAATTCATGTTACTGAAACACAAACTATGGTCATAAGCAACAGTGTCATTGGTACAGGTGATGACTGTATTTCAATAGTAAGTGGATCCAATAACATTCGTGTCAATGATGTCATTTGCGGACCAGGGCATGGAATCAGCATTGGAAGCTTAGGAGCTGGTAAGTCAGAAGCTGAGGTCTCCAATGTGGTAGTGAATAGAGCCATTTTAAAAGGAACAACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTATGGCTATGCAAAAAACATCAAATTTCTGAACATAGTAATGCGAAATGTGACTAATCCCATAATTATAGATCAAAACTACTGTGACCAGAAAGAGCCATGCCAAGAACAGGACTCAGCAGTACAATTGAGCAATGTGGTGTACAAAAACATCAGAGGAACAAGTGCCTCAGAAGTAGCAATCAAATTTGAGTGCAGCAAAACAGTTCGTTGCAGAGAAATTTACTTGCAAGATGTGATTTTAACACCGGAAGTCGGCGCCGACACCGGCACCGTTGCTGCATGTGAGAATGTTGTATATGCCAACAGAGGAAAACTTCACCCTCAGTGCTCTTTTTCTTGA 1305 0.3893 MSPQSIVLSLFIVFLSFGLCFGFYTEDKYNQTNYKYYTGPRRLMKQQHEHFGIMRRTHRSQGSVNVDDYGAIANDGKDDTKAFEKAWNEACSKGYILVVPKNFVYYLKPITFSGPCKPNTAFKVYGTIKAWPHMSAYEKDRRLWIMFDNVSNFAVDSGGVIDGNGRKWWQNSCKVNKSLPCKDAPTAVTFSQCNNLNVTNLKFKNAQQMHVRFQSCFNVTASNLVITAPGNSPNTDGIHVTETQTMVISNSVIGTGDDCISIVSGSNNIRVNDVICGPGHGISIGSLGAGKSEAEVSNVVVNRAILKGTTNGVRIKTWQGGYGYAKNIKFLNIVMRNVTNPIIIDQNYCDQKEPCQEQDSAVQLSNVVYKNIRGTSASEVAIKFECSKTVRCREIYLQDVILTPEVGADTGTVAACENVVYANRGKLHPQCSFS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1503 434 Gene3D - 53 430 IPR012334 -
Lal1g1503 434 SUPERFAMILY Pectin lyase-like 60 432 IPR011050 -
Lal1g1503 434 PANTHER POLYGALACTURONASE 8 432 - -
Lal1g1503 434 ProSitePatterns Polygalacturonase active site. 273 286 IPR000743 GO:0004650|GO:0005975
Lal1g1503 434 SMART pbh1 266 286 IPR006626 -
Lal1g1503 434 SMART pbh1 216 242 IPR006626 -
Lal1g1503 434 SMART pbh1 296 317 IPR006626 -
Lal1g1503 434 SMART pbh1 243 264 IPR006626 -
Lal1g1503 434 SMART pbh1 325 346 IPR006626 -
Lal1g1503 434 PANTHER - 8 432 - -
Lal1g1503 434 Pfam Glycosyl hydrolases family 28 97 419 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1503 Lal-Chr1 17122701 17126444 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1503 1 17122701 17126444 Lal1g1503 1 17122701 17126444 ECH
Lal20g0658 20 6121626 6125354 Lal1g1503 1 17122701 17126444 LSH
Lal2g0026 2 174394 176541 Lal1g1503 1 17122701 17126444 PCT
Lal1g0688 1 4518268 4520407 Lal1g1503 1 17122701 17126444 PCT
Lal2g0756 2 4853836 4857293 Lal1g1503 1 17122701 17126444 PCT
Lal9g0666 9 4582458 4586237 Lal1g1503 1 17122701 17126444 PCT