LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g0709	ATGGAGTCACCGGTTAACATTCACGTATTTCCACCTAAACGCCCCACTTCAACCGGGTTCTCTTCAGAGGGACAGAAAAGACTAAAATTTTCAAGTGATAGTCCACCGAACTCAGAACATGAAAAAACTGAGCAGAAGGCACCCGAGAAATCATCAAATGTTGTAGATTACAGTAATCCGTTTGCAGTATCTGATTTCCTTAATTGTTTAGACAGTGGGAAATTTGGAAGTGTAACAAAGGACGTAGAGTTCCTTATCACTAGAAAAATGAAAATACTAGGGTCATACTTTGTCAAATATCCTACACTTCTTGACCACTTAGTGAAAGTGGTAGTTAATCATGATGAAGAAACTCACATGCTGGAAAGTCAAAAAGTTGCTGGTTTGGCACAGCAAAATGTCATTAATTTGGAGGGTAAGCACGTTGACAAGCAGGTTCCTCCAGCGCCATCACCTGTTGTGATTATTGATTCAGATGATGAAGATGATAGAGATCAAAAATCATTTCTTCCATTTCATAAAGTTATGTTGCCGAAACAACCGTCTCCTGCGGTGAAGATGACTGAGTCTCATCCTCCCATTCGATACAGTCAACAAAATGATCTCAAATTTGAGGCAAGTTTTGCTGATAAAGGTAACAATGGGAGAGATGAAGGTAATCATCTTGCTGATAAAGGTAACAATGGGAGAGATAAAGGTAACAGTGGGAGAGTTAAAAGTAATCATCTTGCTGATAAAGGTAACAGTGGGAAAGATGAAGGTAATCATCTTGCTGATAAAGGTAACAGTGGCAGAGATAAAGGTGTTTATGTTGGTGTCGAGGAGGTAGAAGATGACCAGGTTGATACAAAAGATGAAGAACTAGATGATATTTGGAGGGAGATGTCAATGGCAATAGAATGCTCCAAAGATGTTTCTGTGAACCCCCTTTCTGATGAAGAACCAGAAAAAGATGAGGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGGTACGTTTGTCGCGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGTACTAGAACTTATGTGTCCGATTCATGGAATGCCAAAGAAAAAGATGCATCTGGAATTACTATTGCTGAGGACAATCTCTTGGTAACTGATATCTCTGCACACCCTAGGCATATGAAACAAATGAAGCCTCACCAAGTTGAAGGATTCAATTTTCTTGTTAGAAACCTTGCAGGTGACCATCCTGGGGGCTGTATCTTGGCACATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAGAGTTTTCTTGGCAAGTATCCTAATGCTAGACCTCTAGTGGTACTTCCTAAGGGGATATTATCAACTTGGAAAAAGGAGTTCCAAACATGGCAAGTGGAGGATATACCATTATATGACTTTTACACTGTGAAGGCAGACAGTAGATCTCAGCAACTCGAAGTGTTAAAACAGTGGGTGGAGAGGAAGAGCATCCTTTTCTTAGGATATAAACAGTTCTCTTCTATCATATGTGAGAATGGAACTAGCAGCTCATCAACAGCTTGCCAAGAGATATTGCTAAAGGTTCCTTCGATTCTCATTTTAGATGAAGGACACAATCCAAGGAATGATAATACTGATATGGTACATTCCCTTGCTAAAGTACAAACCCCTAGAAAAGTTGTACTGTCGGGAACCCTATATCAGAATCATGTCAAGGAGGTGTTTAACATCTTAAATCTTGTGAGGCCAAAGTTTTTGAAGATGGAAACATCTAGGCTTATTGTCAAACGCATTTTCAGTAGAGTACATATACCTTCTGGTAAAAGAGGCTTCTTTGATTTGGTAGAAGACACTTTGCAGAAGGATCCAGATTTCAGAAGGAAAGTGGCTGTTATACAAGATTTGCGTGAGATGACAAGCCAGGTACTTCACTATTATAAAGGAGACTTTCTTGACGAGCTTCCCGGTCTTGTTGAATTTACCGTGGTGCTCAATCTTACCCCTAGACAAAAGCATGAGGCTGAGAAATTAAAGAAGTTATCCAGGAAGTTTAAGATTTGTTCTGTGGGCAGTGCTGTCTATCTTCATCCTAAATTGAAGCCCCTTGCTGAAAAATGTGGTGAAAATAGCATAGCTGGTAACGTAAAGGAATTGGATGATATGATAGAGAAACTAGATGTGAAAGATGGAGTGAAGTCAAAATTCTTTCGCAACATGTTAAACCTATGTGACTCAGCAGGGGAGAAGCTTCTGGTTTTTAGCCAATACCTCTTACCTCTGAAATATTTAGAAAGGTTAGCCATGAAATGGAAGGGTTGGAGTCTTGGGAAAGAAATATTTGTCATCTCAGGAGAAGCAAGCACTGAAGAAAGAGAGTGGTCTATGGAGAAATTTAACAATTCACCAGATGCCAAGGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGAATATCATTGGTTGGGGCATCCCGCATCATTATTTTGGATGTTCATCTCAATCCATCAGTAACTCGCCAAGCTATTGGCCGAGCATTCCGGCCAGGTCAGAAAAAGAAAGTCTTTGTATATCGGTTGATAGCCGCCGATTCTCCAGAAGAAGAAGATCACAGTACTTGTTTCAAGAAGGAAATAATTTCGAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGACCGAGCTTATGAAGTTGAGTCAGTTCCTGTGAAAAAATGTGGTGATCTTTTTCTTGAAAGCCCAATATTAGGGGAAGATGTTAAATCTTTGTATAAAAGGTAG	2802	0.3972	MESPVNIHVFPPKRPTSTGFSSEGQKRLKFSSDSPPNSEHEKTEQKAPEKSSNVVDYSNPFAVSDFLNCLDSGKFGSVTKDVEFLITRKMKILGSYFVKYPTLLDHLVKVVVNHDEETHMLESQKVAGLAQQNVINLEGKHVDKQVPPAPSPVVIIDSDDEDDRDQKSFLPFHKVMLPKQPSPAVKMTESHPPIRYSQQNDLKFEASFADKGNNGRDEGNHLADKGNNGRDKGNSGRVKSNHLADKGNSGKDEGNHLADKGNSGRDKGVYVGVEEVEDDQVDTKDEELDDIWREMSMAIECSKDVSVNPLSDEEPEKDEDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYVSDSWNAKEKDASGITIAEDNLLVTDISAHPRHMKQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVERKSILFLGYKQFSSIICENGTSSSSTACQEILLKVPSILILDEGHNPRNDNTDMVHSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRLIVKRIFSRVHIPSGKRGFFDLVEDTLQKDPDFRRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVEFTVVLNLTPRQKHEAEKLKKLSRKFKICSVGSAVYLHPKLKPLAEKCGENSIAGNVKELDDMIEKLDVKDGVKSKFFRNMLNLCDSAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGEASTEEREWSMEKFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHSTCFKKEIISKMWFEWNEYCGDRAYEVESVPVKKCGDLFLESPILGEDVKSLYKR	933

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g0709	933	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	538	895	IPR027417	-
	Lal1g0709	933	CDD	SF2_C_SNF	731	868	-	-
	Lal1g0709	933	PANTHER	PROTEIN CHROMATIN REMODELING 35	18	933	-	-
	Lal1g0709	933	Pfam	SNF2-related domain	419	680	IPR000330	GO:0005524\|GO:0140658
	Lal1g0709	933	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	18	933	IPR044567	GO:0080188
	Lal1g0709	933	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	379	594	IPR027417	-
	Lal1g0709	933	MobiDBLite	consensus disorder prediction	210	263	-	-
	Lal1g0709	933	MobiDBLite	consensus disorder prediction	208	267	-	-
	Lal1g0709	933	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	743	906	IPR001650	-
	Lal1g0709	933	SMART	helicmild6	772	857	IPR001650	-
	Lal1g0709	933	Gene3D	-	663	911	IPR027417	-
	Lal1g0709	933	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	413	592	IPR014001	-
	Lal1g0709	933	SMART	ultradead3	395	604	IPR014001	-
	Lal1g0709	933	Pfam	Helicase conserved C-terminal domain	750	856	IPR001650	-
	Lal1g0709	933	MobiDBLite	consensus disorder prediction	1	53	-	-
	Lal1g0709	933	Gene3D	-	366	609	IPR038718	-
	Lal1g0709	933	MobiDBLite	consensus disorder prediction	33	49	-	-
	Lal1g0709	933	MobiDBLite	consensus disorder prediction	15	32	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g0709	Lal-Chr1	4736833	4744424	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lal1g0709		SNF2_N	2e-19	CL0023

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g0709	1	4736833	4744424	Lal9g0677	9	4662875	4669835	LSH