Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0686 ATGCAAAACAAATTAAAATCCAAAATCACTTTCATCTTTCTCACTCTCTCACTTTCTCACTCACACTTTTTTCGTTTTAATCTCAAAACCCTTTCTTCAGATTCAGAGAGAAAACACAGAACCTTCTTTTCGGATTCTTTTAAAGTTATGGAGGATAATCCCCCTTCAAATTTTTTGGATGGGGAGGTCGTCGGGATCCGATTTGGCATGGCCACACGCCAGGAAATTTGTACAGCATCCATTAGTGACTCTGCAATTAGTCATGCTAGTCAGCTGGCAAATCCTTTTCTTGGCCTTCCCCTTGAATTTGGAAGATGTGAATCATGTGGTACTTCAGAAGCTGGAAAATGTGAAGGCCACTTTGGGTATATTGAGCTACCGGTTCCAATATACCATCCAAGTCATGTTAGTGAATTGAAGCGGATGCTGAGCCTGATTTGCTTAAACTGCTTGAAAATGAAAAAAACCAAGTTTCCAGCATCAGGCAGTGGTGTAGCACAAAGGTTATTACCTTCCTGTTGTCCGGACACCAATGCTGCACAAGTTTCTATTCGGGAGGCCAAAACAACCGATGGGGCCTGTTATTTGACACTCAAGGTGTCCAAGGCGAAGATGCAACCTAGTTTTTGGAGCTTCTTAGAAAAATATGGCTATCGCTATGAGGGTTCAAATATTCGAGCTTTGCTTCCTTCTGAGGCAAAGGAAATTATTAAGAGAATTTCTCATGAGACCAAGAAAAAGCTCGCTGGAAAAGGATATTTTCCTCAAGAGGGCTATGTCTTGAAGTATCTTCCTGTACCACCAAACTGCTTATCAGTGCCAGTGGCTTCAGATGGCATCAGTGTCATGTCTTCGGACCCTTCCATAACAATTCTCAGAAGATTGCTCAGGAAGGTTGAAATAATCAAAAGCTCTAGATCTGGTGAACCAAACTTCGAGTCTCATCAAATAGAAGCAAATGAATTGCAGTCAGTTTTTGATCAGTATCTTCAAGTAAGGGGCACTTCTAAGGCAGCCCGCGATATAGAAACTCATTATGGAGTCAATAAAGAGCTCAATGAATCATCAACAAAAGCATGGCTTGAGAAAATGAGGACTCTATTTATAAGAAAGGGTTCAGGTTTCTCTTCTCGCAGTGTTATCACTGGAGATGCCTACAAGAAAATCAATGAAGTTGGAATTCCGGTTGAAGTGGCCCAAAAGATTACTTTTGAGGAAAGAGTTAATATTCATAACTTGAGCTATCTGCAAAAGTTAGTGGACGAACATTTATGTTTGACATACAAGGAAGGTGTGTCAACTTATTCATTGAGGGAAGGCTCAAAGGGCCACATTTATCTTAGGCCGGGTCAGATAGTCCATCGGAGGATTATGGATGGTGACACTGTGTTCATCAACAGGCCACCGACAACACATAAACACTCGTTACAGGCACTGCAAGTTTACATCCATGATGACCATACCGTCAAAATTAATCCTCTCATTTGTGGGCCCCTTGGGGCTGATTTTGATGGAGACTGTGTCCATCTATTTTACCCACAGTCACTTGCTGCTAAAGCTGAGGTGTTGGAACTATTCGCTGTGGAGAAACAGCTGCTAAGTTCTCACAGTGGTAATCTCAACCTACAACTGACTTCTGATTCACTGTTGTCACTGAAGATGCTGTTCAAGACTTGTATTTTGGATAGAGTGGCAGCTCATAGATTGGCCATGTTTCTTACCCAGCCATTGCCTAGGCCTGCTGTGCTCAAAGTCAATTCTGGTGATGCTTGGACTGCCATGCAACTTTTACAGTGTGCTCTGCCCTCTTCTTTTGATTGCGCTGGAGGCCGTTACTTGATTAGCCATAGTGATATTTTGGAGTTTGATTTCAGTAGGGATCTTCTGCCGACTATGATAAATGAAATCGCGGCCTCAATTTTCTTTTCAAAAGGACCTAAGGAAGCACTAAATTTTTTTGACGTTATTCAGCCCTTTCTGATGGAGAACATATTTGCTGATGGGTTTAGCGTTGGTCTTCAGGATTTCTCGATATCCCGGGCGCGGAAAAGAATTATTAATAGAAGCATTGCGAAAGTTTCTCCATTGCTGTATCAGCTAAGGTCAATATACAATGAGTTGGTGGCACAGCAACTGGAAAAGCACATTCAAGATGTTGAAAAACCTGTTATAAATGTTGCTCTAAAGTCATCCAGACTTGGAGATTTGATTGACTCAAAGAGTAAGTCGGCCATCGACAAGGTGGTTCAACAAATGGGGTTCTTAGGCCAACAGCTTTTTGAAAGGGGAAGATTCTACTCAAGGGAGTTGATTGAGGATATTGCATCCCATTTCCACACAAAGTGTTGTTATGATGGGGATGGTTATCCCTCTGCTGAATATGGGCTGCTCAAAGGTTGTTTTTTTCACGGCTTGGATCCATATGAAGAGATGGTGCATTCAATTTCCACTAGAGAAATACTTGTGCGTTCCTCGAGAGGATTATCTGAACCGGGGACGCTATTCAAGAACTTGATGGCCATCCTTCGTGATGTTGTGGTTTGCTATGATGGGACAGTACGGAATGTTTGCAGCAATTCGGTCATTCAGTTTGAGTATGGGATACAAGCAGGAGATACGACTCAAAACTTATTCCCTGCTGGGGAGCCTGTTGGGGTCTTAGCTGCAACTTCTATGTCAAACCCTGCATATAAGGCCGTTCTTGATGCTAGTCCAAGCAGCACTTCTTCATGGGAGTTGATGAAGGAAATATTACTGTGCAAGGCCAATTTTAGGAACGAACCTGTTGATCATCGTGTTATTTTGTATTTGAATGACTGCTCTTGTGGAAGGAGTTATTGCATAGAACATGCAGCATATGCAGTTAAAAATCAATTGAGAAAAGTCACTCTCAAGGACATAGCAGTGGAGTTCATCGTCGAATATCAACAGCAGCGAAATCGCAAAGACAGTTCTGAAATTGCTGCTGGGCTTGTTGGCCACATTCATCTGGATGAGATTATGCTAAAGAAGCTAAAGGTCAATTTGGATGAAGTTTTGCAAAGATGCCAGGAAAGACTTAATTCCTTTAATCGGAAAAAGAAAGTAAATCAAATTTTTAAGAGGACTGAATTGGATTTCAGCGAGTCTTGCTATTGTTCACATCATTCTGCACCATGTGTCAAGTTCCTCTGGCCAGATGGTGATCACAGTGATTTGGACAAAACTGCAAACATCATGTCTGACATAATCTGCCCGGTTTTGTTAGAGACAGTAGTCAAAGGAGATCCACGTATTAGCTCTGCAAATATAATCTGGGTTAATCCAGATACAAACACATGGATCCGAAACCCCTCCAAATCTCCAAAAGGTGAGTTGGCTCTAGATGTAACTCTCGACAAGGCAGCTGTGAAACAAAGTGGCGATGCTTGGAGGATTGTCCATGACTCATGCCTTCCTATCCTTCATTTGATTGATACAAGACGGTCAATCCCTTATGCTATTAAGCAAATTCAAGAGTTACTCGGAATCTCGTGTACATTTGCTCAAGCAATTCAGCGTCTTGCCACATCAGTAAAAATGGTAGCCAAAGGTCTCCTTAGAGAGCATCTCATTCTCTTAGCAAGTAGCATGACTTGTGGTGGGAATTTGGTGGGCTTTAACACAGGAGGATATAAAGCACTGGCACGCCAACTAAACATCCAAGTACCATTTACTGATGCGACACTGTTTACACCTCGAAAATGTTTCGAGCGAGCTGCTGAAAAGTGCCATACAGATTCTTTATCAAGCGTAGTTGCCTCCTGTTCTTGGGGCAAACATGTGGCAGTGGGTACAGGATCAAAATTTGACGTTGTATGGAATGCGGAAGAGATAAAATCCAGCGAGAACAGAGGGATGGACGTATACAATTTTCTTTACATGGTGAAAGACTTCACCAGTGGAGAAGAAGAAAAAAATGCTTGTTTGGGTGAAGACATTGATGATTTGCTAGAAGATGAGAATATGGATTGGGGCATGTCTCCCCAGCATACGTCTGGTTTTGATGATGCAGTATTTGAAGAGAACTGTGAACTACCGAATGGTTCAACTTCCAATGGTTGGAATATAAATGCAAATAAAAATGAAACAAAATCTAATGATTGGTCTGGTTGGGGATCAAATAAAGGTGAAGGTGTATCTGAAAATGCCAAGGGGGATTCTTGGAGTTCCGGAAAGCAGAAAACTGATGTTGTCCAAGAAGACTCTTCTAGGTCCAATGCTTGGGATGCCAATACAAAGAAAACAGAGACAAAGTCTAATGATTGGTTGGCCTGGGGAGGTAACAAATCTGAAACTCAAGATGACAGTTCTGATAGAGCCCAAGAGGATACTTGGAGCTCCGGTCAGAGGAAAGCTAATGTTACCCAATTAGATGCTCCTAAGTCCGGTTCTTGGGATGCAGACACCAACCAAACAAAAACAAAGTCAAACGATTGGACGGCATGGGGAGGCAAGAAATCGGAAACACAAGATGTCGGGTTTAAAAGAGCAGAAGAGGATTCTTGGAGCTCCGGTAATAGGAAAGTTAATGTTGCCCAAGAAGACTCTTCTAACCCTGGTGCATGGGATGCTAACACCGACCAAACAAAAACAAAGTCAAATGATTGGTTGGACTGGGGAGGAAAGAAATCTGAAATGCAAGACGGTGGGTCCGGACGAGGCCAAAAGGATTCTTGGAACTCTGGTCAGAGGAAAGCTAGTGTTATCCAAGATGACTCTTCTAAGCCTGGTGCTTGGGATGCAAAAGCCAACCAAGCAAAAACAACGTCAAATGAATGGTCAGGGTGGGGAGGAAAGAAATCTGAAGTGCAAGGTGGTGGGTTTGAAAGATCCCAAGAGGACTCTGGGAGCTCCTGGAAGCGGAATGCTGAATCTAAGGTTGGATCCAAAGTTATCCAAGAAGAAGCATCTAGGTCTAATGCTTGGGATGCAAATACAGACCAGACAAAAACGAAGTCCAATGATTGGTCTGCTTGGGGAAAAAGTAAAGGTGAAATAGAAGATAGCGGGTCAGAAAGAGCCCAAGAGGATTCTTGGGGCTCTGCTAAGTTGAAAGCAGAATCAAATGTTGGAGCTGATGTTAGACAAAAAGACTCTTCTAAGTCTAATGCCTGGGGAAGTAATTTCAACAAATCCTCAGAAAACCCAGCATGGGGTTCCCAAAATGAGTCAAATCAAGCTGCAAGTTCCCCAGGATGGGACTCGCAAATTGCTTCCGCAAATTCTGGCCGTGACAAAAACTTTCAATGGGGAAAACCCAAATCCTCAGAAAGCCAATCATGGGATTCCCAAAATGAGTCAAATCATGCTGCAAGTTCTCAAGGATGGGACTCACAAGTTGCTTCAGCTAATTCTGACAGTGACAAAAGCTTTCAATGGGGAAAGCAGGGCAGAGAATCATTCAAGAAAAACCGCTTTGAAGGTTCGCAAGGACGGGGTTCAAATGCAGGTGACTGGAGAAATATGAATCGCCCCCCCAGACCACCACCTCCAATGTACACACCTGAGGAACAGGAAGTTCGTAAGGATATTGATTCTATTATGCAGTCAATAAGACGTATCATGCAACAAGAAGGGTACAATGATGGGGATCCGCTGGCGGCAGAGGATCAAGCATTTGTGCTTGAGAATGTCTTTGAACACCATCCTGATAAGGAAACCAAAATGGGTGATGGAATTGATTATGTCATGGTTAGCAGACACAGCAATTTTCAGGAAAGTAGATGCATGTACGTGGTTTTAAAGAATGGTAAAAAAGAGGACTTTTCCTACAGGAAGTGCCTGGAAAACCTAGTACGGAAGAAGTATCCTGCTGTCGCTGAATCGTTCAACGACAAGCATTTCCGGAAACCTCGTGGAAGAGCAGGAGGGGACCAGGCTCCAACAACACCATTGCCTACTTCTGCTGAAACAAACCAGGCACCAGCAACTCCATTGCCTACTTCTACTGAAACAAACCAGGCTCCAACAACATCATGGCCTACTTCTACCAATTCAAACCAGGCCCCAACAGCTACATGGCCAACTTCTACCGATGCAAACCAGGCCCCAACAGCTACATGGCCTACTTCTACCGATGCAAACCAGGCTCCAACAGCTACATGGCCAACTTCTACTGAAACAAATGAGTAG 6153 0.4308 MQNKLKSKITFIFLTLSLSHSHFFRFNLKTLSSDSERKHRTFFSDSFKVMEDNPPSNFLDGEVVGIRFGMATRQEICTASISDSAISHASQLANPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKRMLSLICLNCLKMKKTKFPASGSGVAQRLLPSCCPDTNAAQVSIREAKTTDGACYLTLKVSKAKMQPSFWSFLEKYGYRYEGSNIRALLPSEAKEIIKRISHETKKKLAGKGYFPQEGYVLKYLPVPPNCLSVPVASDGISVMSSDPSITILRRLLRKVEIIKSSRSGEPNFESHQIEANELQSVFDQYLQVRGTSKAARDIETHYGVNKELNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKKINEVGIPVEVAQKITFEERVNIHNLSYLQKLVDEHLCLTYKEGVSTYSLREGSKGHIYLRPGQIVHRRIMDGDTVFINRPPTTHKHSLQALQVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFAVEKQLLSSHSGNLNLQLTSDSLLSLKMLFKTCILDRVAAHRLAMFLTQPLPRPAVLKVNSGDAWTAMQLLQCALPSSFDCAGGRYLISHSDILEFDFSRDLLPTMINEIAASIFFSKGPKEALNFFDVIQPFLMENIFADGFSVGLQDFSISRARKRIINRSIAKVSPLLYQLRSIYNELVAQQLEKHIQDVEKPVINVALKSSRLGDLIDSKSKSAIDKVVQQMGFLGQQLFERGRFYSRELIEDIASHFHTKCCYDGDGYPSAEYGLLKGCFFHGLDPYEEMVHSISTREILVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSVIQFEYGIQAGDTTQNLFPAGEPVGVLAATSMSNPAYKAVLDASPSSTSSWELMKEILLCKANFRNEPVDHRVILYLNDCSCGRSYCIEHAAYAVKNQLRKVTLKDIAVEFIVEYQQQRNRKDSSEIAAGLVGHIHLDEIMLKKLKVNLDEVLQRCQERLNSFNRKKKVNQIFKRTELDFSESCYCSHHSAPCVKFLWPDGDHSDLDKTANIMSDIICPVLLETVVKGDPRISSANIIWVNPDTNTWIRNPSKSPKGELALDVTLDKAAVKQSGDAWRIVHDSCLPILHLIDTRRSIPYAIKQIQELLGISCTFAQAIQRLATSVKMVAKGLLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPRKCFERAAEKCHTDSLSSVVASCSWGKHVAVGTGSKFDVVWNAEEIKSSENRGMDVYNFLYMVKDFTSGEEEKNACLGEDIDDLLEDENMDWGMSPQHTSGFDDAVFEENCELPNGSTSNGWNINANKNETKSNDWSGWGSNKGEGVSENAKGDSWSSGKQKTDVVQEDSSRSNAWDANTKKTETKSNDWLAWGGNKSETQDDSSDRAQEDTWSSGQRKANVTQLDAPKSGSWDADTNQTKTKSNDWTAWGGKKSETQDVGFKRAEEDSWSSGNRKVNVAQEDSSNPGAWDANTDQTKTKSNDWLDWGGKKSEMQDGGSGRGQKDSWNSGQRKASVIQDDSSKPGAWDAKANQAKTTSNEWSGWGGKKSEVQGGGFERSQEDSGSSWKRNAESKVGSKVIQEEASRSNAWDANTDQTKTKSNDWSAWGKSKGEIEDSGSERAQEDSWGSAKLKAESNVGADVRQKDSSKSNAWGSNFNKSSENPAWGSQNESNQAASSPGWDSQIASANSGRDKNFQWGKPKSSESQSWDSQNESNHAASSQGWDSQVASANSDSDKSFQWGKQGRESFKKNRFEGSQGRGSNAGDWRNMNRPPRPPPPMYTPEEQEVRKDIDSIMQSIRRIMQQEGYNDGDPLAAEDQAFVLENVFEHHPDKETKMGDGIDYVMVSRHSNFQESRCMYVVLKNGKKEDFSYRKCLENLVRKKYPAVAESFNDKHFRKPRGRAGGDQAPTTPLPTSAETNQAPATPLPTSTETNQAPTTSWPTSTNSNQAPTATWPTSTDANQAPTATWPTSTDANQAPTATWPTSTETNE 2050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0686 2050 Pfam RNA polymerase Rpb1, domain 3 531 675 IPR007066 GO:0003677|GO:0003899|GO:0006351
Lal1g0686 2050 Coils Coil 1006 1026 - -
Lal1g0686 2050 Gene3D RNA polymerase ii 403 455 - -
Lal1g0686 2050 Gene3D RNA polymerase II, clamp domain 60 163 IPR044893 -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1511 1542 - -
Lal1g0686 2050 Gene3D - 844 884 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1950 2050 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1799 1813 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1496 1510 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1968 2050 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1639 1665 - -
Lal1g0686 2050 Pfam RNA polymerase Rpb1, domain 5 804 1220 IPR007081 GO:0003677|GO:0003899|GO:0006351
Lal1g0686 2050 Gene3D - 371 538 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1453 1491 - -
Lal1g0686 2050 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 61 1283 - -
Lal1g0686 2050 Pfam Protein of unknown function (DUF3223) 1866 1935 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1349 1849 - -
Lal1g0686 2050 PANTHER DNA-DIRECTED RNA POLYMERASE 247 1432 IPR045867 GO:0003899|GO:0006351
Lal1g0686 2050 Pfam RNA polymerase Rpb1, domain 1 90 305 IPR007080 GO:0003677|GO:0003899|GO:0006351
Lal1g0686 2050 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 247 1432 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1351 1383 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1700 1798 - -
Lal1g0686 2050 Gene3D - 1847 1941 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1668 1687 - -
Lal1g0686 2050 Pfam RNA polymerase Rpb1, domain 2 374 527 IPR000722 GO:0003677|GO:0003899|GO:0006351
Lal1g0686 2050 SMART rpolaneu7 257 556 IPR006592 GO:0003677|GO:0003899|GO:0006351
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1590 1604 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1558 1577 - -
Lal1g0686 2050 MobiDBLite consensus disorder prediction 1390 1438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0686 Lal-Chr1 4487623 4507131 Dispersed/Transposed