Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0672 ATGAAGAAATCTCATGCATCTTCTTGTTCATCTTCTTCTTCTATTGTGTTTGAATCTTCCATTGAAAAAAGAAGGTCTAAGTATCCAAGAAGGAATGTTAAGTCACAACAATGTAATAAGCAGAACAAAACCACTGGCAGAAGAAGCTCCATTTATAAAGGAGTTACAAGGCATAGATGGACTGGAAGGTTTGAAGCTCACCTATGGGATAAGAGTTCTTGGAACAACATTCAGAACAAGAAGGGTATACAAGGGGCATATGATTCTGAAGAAACTGCAGCACGTACCTATGATCTTGCAGCCCTTAAGTATTGGGGAAATGGTGCAACTTTAAATTTCCCGATTGAAACATATAGCAAGGACCTTGATGAAATGAAGAAGGTCACAAAAGAAGAATTCTTGGCCAATTTAAAGCGTCAAAGCAGTGGTTTTTCTAGAGGTGTTTCTAAGTACCGTGGTGTAGCAAGGCATCACCATAATGGTCGCTGGGAAGCTCGCATTGGGAGAGTATGTGGTAACAAATATCTTTACTTAGGAACATATAAAACTGAAGAGGAAGCAGCTATAGCATATGACATGGCAGCAATAGAGCACAGAGGACTAAATGCAGTGACCAATTTTGACATAAGTAACTATAGTGACAAAATAAAGATGAAAAATTATAGATCTCAAGAAGCTGAAACACAAACAGAAACAGCTCCTAGCTCAATAGATTCTGAAGAAGCAGAAGTAGAACAAAAAAACATACCACCTTCACTAGAAAATCTGCACAAGGAACCTCAAGAGTCACAAATCCAAAACACTAACTTTTTTATAAGTGAGGAATCCTCTGCAGTTATTCCTATGGAGCATGTTTTTGAGCAGGACATGCCATGGAACTTCATGGATACTAATCTATCTCAGTTTCAAGATATAGAGTTGGGTTTGAGCAAAGAAGAGAATTTATCAAGCATGTTTAATGGTGCAGGCTTTGAGGATGACATTGAATTTTTGTTCAGCACAGAACCTGGTGGTGGAGATTTTAATTTCAATGAAGTTTTGGATAGTATAGTTGAGTGTGGAGATATTGGTGGTGGTGCTGACACAATGGTGGATAATAACAAGCAGAAGATATTGTCCTCAGCTTCTTCACCATCATCATCATCTACAACAACTACAGTTTCTTGTGACTATTCTCCATGA 1182 0.3807 MKKSHASSCSSSSSIVFESSIEKRRSKYPRRNVKSQQCNKQNKTTGRRSSIYKGVTRHRWTGRFEAHLWDKSSWNNIQNKKGIQGAYDSEETAARTYDLAALKYWGNGATLNFPIETYSKDLDEMKKVTKEEFLANLKRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTEEEAAIAYDMAAIEHRGLNAVTNFDISNYSDKIKMKNYRSQEAETQTETAPSSIDSEEAEVEQKNIPPSLENLHKEPQESQIQNTNFFISEESSAVIPMEHVFEQDMPWNFMDTNLSQFQDIELGLSKEENLSSMFNGAGFEDDIEFLFSTEPGGGDFNFNEVLDSIVECGDIGGGADTMVDNNKQKILSSASSPSSSSTTTTVSCDYSP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0672 393 SUPERFAMILY DNA-binding domain 50 116 IPR016177 GO:0003677
Lal1g0672 393 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Lal1g0672 393 ProSiteProfiles AP2/ERF domain profile. 51 114 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 MobiDBLite consensus disorder prediction 32 51 - -
Lal1g0672 393 SMART rav1_2 51 120 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 Pfam AP2 domain 51 106 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 Pfam AP2 domain 149 199 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 MobiDBLite consensus disorder prediction 1 19 - -
Lal1g0672 393 MobiDBLite consensus disorder prediction 1 51 - -
Lal1g0672 393 MobiDBLite consensus disorder prediction 369 393 - -
Lal1g0672 393 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 382 - -
Lal1g0672 393 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 382 - -
Lal1g0672 393 CDD AP2 50 115 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 Gene3D AP2/ERF domain 51 116 IPR036955 GO:0003700|GO:0006355
Lal1g0672 393 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Lal1g0672 393 MobiDBLite consensus disorder prediction 225 239 - -
Lal1g0672 393 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
Lal1g0672 393 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0672 Lal-Chr1 4384292 4388369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0672 138 225 AP2-EREBP Transcription Factor Family AT5G57390 39.175 3.02e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lal1g0672 AP2 5e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0672 1 4384292 4388369 Lal9g0653 9 4495661 4499414 LSH