Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0666 AAAGCTAGCAAGGCATTAACTATGTCTTCCTTAAAATTCTATGGTAAAGTTGATGAATCTGATCAAGTTATTCTCCTAGCTCGAAGGAGAACACGAAAAAGAATAACCATCATAGCATTATCCACAATAGTCCTTGTTTCTATTGTATGTGCTGCTGTATTTGGAACTGTTGCTCATAAAAATGATAATGATAATACAAATGCTGATGATGCCAATAATGGCAATAATTCTCTTTCCAATGCAGTGAAAGTGGTTTGTGATGTGACTTTGTACAAAGATGCATGTTATAGAAGCCTTGGTCCTATGGTGCAATTGGGTAAGGTTACACCTGAGGATTTGTTCAAGTTATCAATACAAGTGGCATTAGTTGAGGTTAACAATGCTGCTAAGAAATTCTATGATCAGGGAAATTTTGATGTAGTGAATAGTGATAGAAGGACCAAGGAAGCTTTGAAAAATTGTCATGAACTTTTAGGTCTTGCAATTGATCATCTTAATAGTTCTCTATCTTCTGGTGAAAATTCTTCATTGTTTGATGTTTTGGAGGATCTTAAAACTTGGTTGAGTGCTGCAGGTACTTACCAACAGACATGCATTGATGGGTTGGAAGAGACAAAAGAATCATTGAAGAACACTGTTGAAAGCTACCTCCAAAATTCTACTGAGTTCACTAGTAATAGTCTTTCCATTATTACTTGGATTGACAAAGCTACAACCTCAGTGAACTTGAGGCGCTTATTGAGTTTCCATCATCACAATGAAGAACCAAAGTGGCTCCATTCCAAAGATAGGAAGCTACTTCAAAAACCTAATTTGAAAAAGATAGCTAATATTGTTGTGGCCAAAGATGGCAGTGGGAAATATAAAACAATTTCTGAAGCACTTAATAATGTTGATGCTAAAAGTAACAACAGAACTGTGATCTATGTGAAGAAAGGGATTTACATTGAAAATGTAGAAGTAGATAAGACCAAATGGAATGTCATGATCATTGGTGATGGTAAGAATGCTTCTATTATATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACAGTTGCTATAAAAGGTAAGAATTTCATTGCTAGAGACATGGGCTTTGCAAACACAGCTGGTCCAAGCAAGCACCAAGCAGTGGCACTATTAACTTCTTCTGATCAATCAGTGTACTATAGATGTCAATTTGATGCATTTCAAGACACTCTTTATGCTCAAGCCAATCGCCAATTCTTCAGGGAATGTGATATATATGGCACAGTTGATTTCATTTTTGGCAATTCTGCAGTTATCATACAAAACAGCAACATTTTACCTAGGGTTCCTTTAAATGGTCAACAAAACACAATCACAGCACAAGGCAAATCTGATCCTAATATGAACACAGGAATTTCATTTCAGAATTGCACCATTTCACCATTTGGTAACTTGGGTTTTGTCCAAACATACCTTGGAAGACCTTGGAGGAATTACTCAACCACAGTGTTTATGCAGTCAAATATATCAAACTTCATTAACCCTAGTGGTTGGTTACCATGGGTTGGAAATTCAGCACCAGATACCATATTTTATGCAGAATATCAGAATATTGGAGAAGGTGCTTCAACAAAAAATAGGGTCAAGTGGAAGGGTGTGATAACCAATGTTACTACCAAACAAGCTAGTAAGTTTACAGTTAAGGCCTTTATTTCAGGGAATCAATGGATTTCAGCTTCTGGTGCTCCCTATAGATCTTCTCTGTGA 1755 0.3664 KASKALTMSSLKFYGKVDESDQVILLARRRTRKRITIIALSTIVLVSIVCAAVFGTVAHKNDNDNTNADDANNGNNSLSNAVKVVCDVTLYKDACYRSLGPMVQLGKVTPEDLFKLSIQVALVEVNNAAKKFYDQGNFDVVNSDRRTKEALKNCHELLGLAIDHLNSSLSSGENSSLFDVLEDLKTWLSAAGTYQQTCIDGLEETKESLKNTVESYLQNSTEFTSNSLSIITWIDKATTSVNLRRLLSFHHHNEEPKWLHSKDRKLLQKPNLKKIANIVVAKDGSGKYKTISEALNNVDAKSNNRTVIYVKKGIYIENVEVDKTKWNVMIIGDGKNASIISGSLNFVDGTPTFSTATVAIKGKNFIARDMGFANTAGPSKHQAVALLTSSDQSVYYRCQFDAFQDTLYAQANRQFFRECDIYGTVDFIFGNSAVIIQNSNILPRVPLNGQQNTITAQGKSDPNMNTGISFQNCTISPFGNLGFVQTYLGRPWRNYSTTVFMQSNISNFINPSGWLPWVGNSAPDTIFYAEYQNIGEGASTKNRVKWKGVITNVTTKQASKFTVKAFISGNQWISASGAPYRSSL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0666 584 SUPERFAMILY Pectin lyase-like 276 580 IPR011050 -
Lal1g0666 584 CDD PMEI-like_3 85 236 - -
Lal1g0666 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 75 234 IPR006501 GO:0004857
Lal1g0666 584 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Lal1g0666 584 Gene3D - 273 584 IPR012334 -
Lal1g0666 584 Coils Coil 199 219 - -
Lal1g0666 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 78 235 IPR035513 -
Lal1g0666 584 Pfam Pectinesterase 277 570 IPR000070 GO:0030599|GO:0042545
Lal1g0666 584 SMART PMEI_2 77 230 IPR006501 GO:0004857
Lal1g0666 584 PANTHER PECTINESTERASE 12 581 - -
Lal1g0666 584 Pfam Plant invertase/pectin methylesterase inhibitor 81 230 IPR006501 GO:0004857
Lal1g0666 584 PANTHER PECTINESTERASE 12 581 - -
Lal1g0666 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 234 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0666 Lal-Chr1 4361969 4365422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0666 14 584 Carbohydrate Esterase AT3G10710 54.101 0.0 638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0666 1 4361969 4365422 Lal2g0731 2 4598131 4600943 LSH