Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0663 ATGGGACGCAAGAAGACTAATGAGATTGAAGATGAGATGCTCCCCAACAATCTGACAGAGTCACAGATGAATGATGAGGGTGATGGAGGAAGTGCCAGTGGAGTTATTCTGAAGAAAGGTCCATGGACATCTGCTGAAGATGCGATTTTAGTTGATTATGTCAAGAGGCATGGGGAGGGGAACTGGAATGCTGTTCAGAAGCATTCGGGCTTGTCGCGTTGTGGAAAAAGTTGCCGATTGCGATGGGCCAATCACCTAAGGCCGAATTTAAAGAAAGGGGCGTTTACTGCAGAAGAGGAGCAGTTGGTTACTGAACTTCACGCAAAAATGGGAAACAAGTGGGCACGCATGGCTGTACACTTGCCTGGCCGCACAGATAATGAGATAAAGAACTACTGGAACACCCGAATCAAAAGATGTCAGCGGGCTGGCTTACCACTTTATCCTCCTGAAGTGTGGTTGAAAGCATTCCAAGAGAGTCAGCAAAGCCAAAGCAGTGAAAGCACTGGTGGATTTAATGCTGGCAGTAAAGTGCATCACAATTTCTTGCACAAAAACAGTTACGAGATACATGATTCAGTATTTGACAGTCTGAAGGATAGTCAGAGAATTTCACCTAATGTGCCTGAGCTTCCTGATATTTATGATTATAGCAATATGCTGAAAAGTCTTGATTCTTCTCAGTACTGTAGCTTTGTGCCATCAACATCACCTATCCATAAGTGTCTTCGAGAGTCAACAATGCCATTTCTTGGTTCCAGTGAAATGAACAGAAATGTGTTTTATCCATTTGATCATATTCAGGCTAATGCCTCTGATAAGATTGCTCAATCATTTGGAATGCAATCATCCCTTGATCATTGTCCCTCCTCACACAGCTCAATGTGTTACAGCCATTCACTTTCAAATGGTAATTCCTCTACTTCTAAGCCAACTTATGAGGCTGTGAAGCTGGAGCTCCCTTCACTCCAATATCCGAAAATTGATTTAGGTAGCTGGGGTACATCTCCCCCACCTCCTTTGCTTTATTCGGTTGATGATTTCATTCAATCTCCTACACCAATTAGTGCAATGGAGTCAGATAGTTCTTCCCCACGGAATAGTGGCCTTCTGGATGCTCTACTTTATCAGGCAAGGACTATGAGCAGTTCCAAGAACCATTATTCTGACAAGAGTTCAAACTCATCTATTGCAACTCCTGGTCACAGAGCAGACAGCTCCATGTTGAACATGCACGAGACGGAATGGGAAGACCATACTGACCCTGTATCTCCATTTGGTGCAACTTCTATATTAAATGAATGCCCTGTTGCCAATGCAAATTCATTGGATGAAACACCACCCGATCAGACCTTCAATGGGAATATTGTGAAATTAGAGTCTGCTGACCAGACTGGGCAGGATTCTGGGCATTGCAAGAACCAAACCATCACAACTGATGCTATATCAACCCTTTTTGGAGATGATTTAGCCACTGACTACAAGCATATAAGTGCTGGAACTTCTAAATCATATCAGGTATGGGGCTTTGGTTCTTGTGCACAGAACAACAGTGCCTCCTGTCTGGTAGATGTCTTCTCTCAGTCATGA 1590 0.4358 MGRKKTNEIEDEMLPNNLTESQMNDEGDGGSASGVILKKGPWTSAEDAILVDYVKRHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQLVTELHAKMGNKWARMAVHLPGRTDNEIKNYWNTRIKRCQRAGLPLYPPEVWLKAFQESQQSQSSESTGGFNAGSKVHHNFLHKNSYEIHDSVFDSLKDSQRISPNVPELPDIYDYSNMLKSLDSSQYCSFVPSTSPIHKCLRESTMPFLGSSEMNRNVFYPFDHIQANASDKIAQSFGMQSSLDHCPSSHSSMCYSHSLSNGNSSTSKPTYEAVKLELPSLQYPKIDLGSWGTSPPPPLLYSVDDFIQSPTPISAMESDSSSPRNSGLLDALLYQARTMSSSKNHYSDKSSNSSIATPGHRADSSMLNMHETEWEDHTDPVSPFGATSILNECPVANANSLDETPPDQTFNGNIVKLESADQTGQDSGHCKNQTITTDAISTLFGDDLATDYKHISAGTSKSYQVWGFGSCAQNNSASCLVDVFSQS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0663 529 MobiDBLite consensus disorder prediction 1 35 - -
Lal1g0663 529 MobiDBLite consensus disorder prediction 12 28 - -
Lal1g0663 529 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 3 453 - -
Lal1g0663 529 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 461 520 - -
Lal1g0663 529 SMART sant 38 88 IPR001005 -
Lal1g0663 529 SMART sant 91 139 IPR001005 -
Lal1g0663 529 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 3 453 - -
Lal1g0663 529 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 461 520 - -
Lal1g0663 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Lal1g0663 529 Pfam Myb-like DNA-binding domain 42 102 - -
Lal1g0663 529 Gene3D - 38 91 - -
Lal1g0663 529 SUPERFAMILY Homeodomain-like 38 133 IPR009057 -
Lal1g0663 529 MobiDBLite consensus disorder prediction 384 404 - -
Lal1g0663 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Lal1g0663 529 Gene3D - 94 140 - -
Lal1g0663 529 ProSiteProfiles Myb-like domain profile. 37 86 IPR001005 -
Lal1g0663 529 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
Lal1g0663 529 CDD SANT 41 86 IPR001005 -
Lal1g0663 529 MobiDBLite consensus disorder prediction 384 403 - -
Lal1g0663 529 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0663 Lal-Chr1 4338016 4342850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0663 34 517 MYB Transcription Factor Family AT5G06100 43.227 1.09e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal1g0663 Myb_DNA-bind_6 7.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0663 1 4338016 4342850 Lal1g0663 1 4338016 4342850 ECH
Lal1g0663 1 4338016 4342850 Lal2g0738 2 4661260 4666069 LSH