Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0650 ATGGCTGATGCCAGTCCTCGGACTGATATTTCTACAGATGCTGACACCGATGACAAGAATCAGCAGTTTGATAGAAGTCTATCTCTTCCTGGTGTGGTTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGAGTCTCCGTAGGCTTGCTCAGAATCGTGAGGCAGCAAGGAAAAGTCGGCTGAGAAAGAAAGCTTATGTCCAACAGCTGGAAAGTAGTCGTTTGAAGCTGACCCAACTAGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAGTCTTCATATCAAGCTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCGATGCAGTTTGATGCTGAATATGCAAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAATTCTCATGCAAGTGATACGGAACTACGCATGATTATTGATGGAATTTTGGCACATTATGATGATATTTTTAGGCTGAAAGGTATTGCAGCTAAGGCTGATGTTTTCCATTTGTTGTCTGGCATGTGGAAAACACCTGCCGAGAGGTGTTTTTTGTGGCTAGGTGGTTTTCGGTCATCTGAAGTCCTTAAGCTTCTGGCAAATCAATTGGAACCTCTCACGGAGCAGCAGGTGGCGGGTATCACCAACTTGCAGCAATCATCGCAAGAAGCAGAAGATGCATTATCTCAGGGCATGGATGCATTGCAACAGTCCCTTGCTGAGACATTGTCTACTGGATCACAGAACTCGTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCAATGGCCATGGGTAAGCTAGGGACACTTGAAGGGTTTATTCGACAGGCTGACAATCTGCGCCAGCAAACTCTACAGCAAATGCACCGTATACTAACAACTCGCCAATCGGCTCGTGCTCTCCTTGCAATACATGACTATTTTTCACGGCTTCGTGCTCTCAGTTCGCTCTGGCTTGCCCGCCCAAGAGATTGA 999 0.4655 MADASPRTDISTDADTDDKNQQFDRSLSLPGVVSDSSDRSKDKTDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSMSGNGAMQFDAEYARWLEEQNRQINELRAAVNSHASDTELRMIIDGILAHYDDIFRLKGIAAKADVFHLLSGMWKTPAERCFLWLGGFRSSEVLKLLANQLEPLTEQQVAGITNLQQSSQEAEDALSQGMDALQQSLAETLSTGSQNSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0650 332 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 1 332 - -
Lal1g0650 332 PANTHER TRANSCRIPTION FACTOR TGA9 1 332 - -
Lal1g0650 332 Gene3D - 46 95 - -
Lal1g0650 332 Coils Coil 123 143 - -
Lal1g0650 332 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 50 65 IPR004827 GO:0003700|GO:0006355
Lal1g0650 332 SUPERFAMILY Leucine zipper domain 47 90 IPR046347 GO:0003700|GO:0006355
Lal1g0650 332 Pfam bZIP transcription factor 47 87 IPR004827 GO:0003700|GO:0006355
Lal1g0650 332 Coils Coil 66 93 - -
Lal1g0650 332 ProSiteProfiles DOG1 domain profile. 112 329 IPR025422 GO:0006351|GO:0043565
Lal1g0650 332 SMART brlzneu 43 106 IPR004827 GO:0003700|GO:0006355
Lal1g0650 332 MobiDBLite consensus disorder prediction 36 59 - -
Lal1g0650 332 Pfam Seed dormancy control 129 204 IPR025422 GO:0006351|GO:0043565
Lal1g0650 332 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 45 89 IPR004827 GO:0003700|GO:0006355
Lal1g0650 332 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0650 Lal-Chr1 4234135 4240256 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lal1g0650 DOG1 7.8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0650 1 4234135 4240256 Lal1g0650 1 4234135 4240256 ECH
Lal1g0650 1 4234135 4240256 Lal2g0708 2 4358200 4364869 LSH
Lal1g0650 1 4234135 4240256 Lal9g0619 9 4214444 4220967 LSH