Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0638 ATGGACCTCATTCTCCATTCTAGGTCAAACCCACTTCTAGTTTCATCATCACCACTCACCCCAACTTCTCAAAATCCCATCTTTTTCACACACCACTACCGCACAACAACAACAATAAGAAAGCTGAAGTTCCGAGCTTCAGCTTCCGCAGACCCAAATGGGTCTCCCTGGCTTGACATTTCCGATTCGCTGCGGCGCGGTTCGAGGCGGTTTTGGTTGAAGTTTGGGGAGATGGTAAAGAAGGAAGCAGGTTTTGACTTGGGAGATTTTGGTAATGTTAGTAAGGTTGGTGAGGTTGTTGATGGAGTGAAGGCACGCGGAGATGAATTTGGAAGGTTTGGGACTAATTGGGTATCTGAGTTTGTGGATTGGAACAGTTGGGAACGTTGGAAGAATATTAAGAACTGGGAACCTAAGCGAATTGGAGCATTAGTTCTTTATATATTTGTTGTGGCATTTACTTGTAGAGGAATATACATAGCAATTCAAGCACCTTACCTGAATCGCCAGAAAAAAGAATTGACAGAAGCCTACATGGAAGCATTAATTCCTGAGCCATCCCCCAGTAACATTAGAAGATTTAAGAAGGGCATATGGAAGAAGACGACACCAAAAGGCTTGAAAATGAAAAAGTTTATTGAAGGACCTGATGGAACTCTTGTTCATGATAATTCTTATGTTGGAGAGGATGCATGGGAGGATGATCTAGAGGCTCCTGAGGAACATGTAGAAAAAATTATACAGGATGATGAAAGGCTAAAGAAAGAAGAGAAGAAAGAACTAACAAAAGGCTTGGGCATTTCAGGTGAAGTTCAAACTGAGGGCACATGGCGTGAGAGGCTTCATCAGTGGAGGGAAATCCTTAGAAATGAACGTCTTGTTGAACAAATGGATTCCTCAAATTCCAAATACGTAGTTGAATTTGACATGAAAGAGGTGGAAAATAGTCTTCGCAAGGATGTGGCAGAAAAGGTGACAGGCACTCAGGGAACTAGGGCTCTGTGGATAGCTAAGAGATGGTGGCACTATCGTCCTAAACTTCCTTACAATTATTTTCTTGATAAACTTGATAGTTCTGAGGTAGAAGCAATTGTGTTTACTGAAGACTTAAAAAGATTGTATGTGACAATGAAAGATGGTTTTCCACTGGAATTTGTGGTTGATATCCCTCTTGATCCTTATCTGTTTGAGATGATTACGAGTTCTGGAGCTGAAGTGGATCTTCTTCAGAAGAAACAGATCCATTATTTTATGAAAGTTGTGATTGCATTGTTACCTGGAATACTAATTCTCTGGCTTATAAGGGAGTCTGTGATGCTTCTGCACATCACTTCCAGCCGTTTTCTTTACAAAAAGTATAACCAACTCTTTGATATGGCTTATGCAGAAAATTTCATCATGCCAGTTGGAGATGTTGGTGAAACAAAATCTATGTACAAGGAAGTTGTGTTGGGGGGTGATGTTTGGGATCTTCTTGATGAGTTGATGATCTATATGGGAAATCCTATGCAGTTCTATGAAAAGGGTGTTCAGTTTGTGCGGGGTGTTCTACTCTCCGGACCTCCAGGAACAGGAAAAACACTTTTTGCCAGGACACTTGCAAAAGAAGGTGGATTGCCTTTTGTTTTTGCTTCTGGTGCAGAGTTCACAGATAGTGAAAAAAGTGGAGCAGCTAGGATAAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTCTTTGTGGATGAAATAGATGCTATTGCTGGAAGACATGCTAGGAAGGATCCACGAAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGATGGGGACAAGGAAAAAACGGGTGTTGACCGTCTGTCCCTCAGACAAGCTGTCATATTCATATGTGCCACAAATAGGCCCGATGAATTAGATCTTGAATTTGTTCGTCCTGGGCGTATAGATCGTCGTCTTTACATTGGTTTGCCTGATGCCAAGCAAAGAGTTCAAATTTTTGGCGTGCATAGTTTTGGAAAGCAACTTGCAGAGGATGTGAATTTTGAAAAGCTTGTCTTCCGTACTGTTGGATTCTCAGGAGCAGATATTAGAAACCTTGTCAACGAAGCAGCAATAATGTCGGTGAGAAAAGGGCATTCCAAAATTTTCCAGGAAGACATTATTGATGTATTAGATAAACAACTGCTAGAGGGTATGGGTGTCCTTCTAACTGAGGAAGAGCAACAGAAATGTGAAGAAAGTGTATCTTTTGAAAAGAGGAGACTTCTTGCTGTCCATGAAGCTGGTCATGTGGTGTTAGCTCACTTATTTCCTCGGTTTGACTGGCATGCATTTTCACAGCTCCTGCCAGGTGGCAAGGAAACTGCAATATCTGTATTCTACCCTCGAGAAGAAATGGTTGACCAAGGTTATACAACCTTTGGTTACATGAAGATGCAAATGGTAGTGGCTCATGGTGGTCGATGTGCTGAACGTGTTGTATTTGGTGATGATATAACTGATGGAGGGAGAGATGATCTAGAAAAGATAACAAAGATTGCTAGGGAGATGGTAATCAGCCCTCAAAATCCAAGGTTGGGGTTATTGGGTTTAACAAAAAGGATTGGCTTAGATGATCGACCAGACAGTTCAGACGGCGAGTTGATAAGATATAGATGGGACGATCCTCAAGTTATTCCTGCCAATATGACACTAGAGATGTCTGAGCTCTTTTCACGGGAGTTGACAAGGTACATTGAAGAAACAGAAGAACTTGCAATGAATGCTTTGAGAGATAATAGGCATATCCTGGACTTGGTTGCAAGGGAACTGTTGGAGAGGTCAAGAATAACTGGATTGGAAGTTGGAGAAAAGTTGAAGGGATTGTCTCCAGTAATGTTTGAGGACTTTGTCATGCCTTTCCAGTTAAATGTAGAACAGGAGGGACCGTTCCCACATAATGATCGTGTGCGATATCAGCCTCCGGATTTATATCCTGCTCCTCTCCATCGATGTTGA 2988 0.418 MDLILHSRSNPLLVSSSPLTPTSQNPIFFTHHYRTTTTIRKLKFRASASADPNGSPWLDISDSLRRGSRRFWLKFGEMVKKEAGFDLGDFGNVSKVGEVVDGVKARGDEFGRFGTNWVSEFVDWNSWERWKNIKNWEPKRIGALVLYIFVVAFTCRGIYIAIQAPYLNRQKKELTEAYMEALIPEPSPSNIRRFKKGIWKKTTPKGLKMKKFIEGPDGTLVHDNSYVGEDAWEDDLEAPEEHVEKIIQDDERLKKEEKKELTKGLGISGEVQTEGTWRERLHQWREILRNERLVEQMDSSNSKYVVEFDMKEVENSLRKDVAEKVTGTQGTRALWIAKRWWHYRPKLPYNYFLDKLDSSEVEAIVFTEDLKRLYVTMKDGFPLEFVVDIPLDPYLFEMITSSGAEVDLLQKKQIHYFMKVVIALLPGILILWLIRESVMLLHITSSRFLYKKYNQLFDMAYAENFIMPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYEKGVQFVRGVLLSGPPGTGKTLFARTLAKEGGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGDKEKTGVDRLSLRQAVIFICATNRPDELDLEFVRPGRIDRRLYIGLPDAKQRVQIFGVHSFGKQLAEDVNFEKLVFRTVGFSGADIRNLVNEAAIMSVRKGHSKIFQEDIIDVLDKQLLEGMGVLLTEEEQQKCEESVSFEKRRLLAVHEAGHVVLAHLFPRFDWHAFSQLLPGGKETAISVFYPREEMVDQGYTTFGYMKMQMVVAHGGRCAERVVFGDDITDGGRDDLEKITKIAREMVISPQNPRLGLLGLTKRIGLDDRPDSSDGELIRYRWDDPQVIPANMTLEMSELFSRELTRYIEETEELAMNALRDNRHILDLVARELLERSRITGLEVGEKLKGLSPVMFEDFVMPFQLNVEQEGPFPHNDRVRYQPPDLYPAPLHRC 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0638 995 Gene3D Peptidase M41 738 952 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0638 995 Gene3D - 473 654 IPR027417 -
Lal1g0638 995 Pfam ATPase family associated with various cellular activities (AAA) 516 652 IPR003959 GO:0005524|GO:0016887
Lal1g0638 995 PANTHER ATP-DEPENDENT PROTEASE 9 995 - -
Lal1g0638 995 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 9 995 - -
Lal1g0638 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 723 IPR027417 -
Lal1g0638 995 Pfam AAA+ lid domain 675 717 IPR041569 -
Lal1g0638 995 Gene3D - 655 726 - -
Lal1g0638 995 CDD AAA 514 653 - -
Lal1g0638 995 Pfam Peptidase family M41 745 944 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0638 995 SUPERFAMILY FtsH protease domain-like 748 958 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lal1g0638 995 SMART AAA_5 512 655 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0638 Lal-Chr1 4117975 4131444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0638 479 945 Miscellaneous Gene Families AT5G53170 29.752 1.08e-55 206