Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0637 ATGTCGGTTCTAATCGTAACAAGCTTGGGAGACCTAGTCGTAGATTTGCACACAGACAAGTGTCCTTTAACCTGCAAGAATTTCTTGAAGCTTTGTAAAATTAAGTACTACAATGGATCTCTTTTTCACAGTGTTCAAAAAGATTTCACTGCTCAGACCGGTGATCCAACCGCTACCGGAACTGGCGGTGATTCCATCTACAAGTTTCTTTATGGTGATCAAGCGCGGTTTTTCAGCGATGAAATTCATTTAGATCTTAAGCATTCTAAGACTGGAACCTTTGCTATGGCTAGTGCTGGAGAGAATCTTAATGCTTCACAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGTTAGCTGAAGGATTGGAGACTTTGACTAGAATAAATGAGGCTTATGTGGATGAGAAGAGCAGGCCATATAAAAATATCCGAATCAAGCACACATACATCTTGGAGGATCCTTATGATGATCCTCCTCAGCTAGCTGAGATGATTCCTGATGCTTCACCAGAGGGAAAACCAAAAGATGAGGTTGATGATGGTGTGAGACTTGAAGATGATTGGGTACCCATGGATGAACAATTAGACCCAGCAGAGCTTGAGGAGGTTATTAGAGATAAGGAAGCACACTCTAGAGCTGTTATACTTGAGAGTGTCGGAGATATTCCTGATGCTGAAATTAAGCCCCCAGACAATGTACTTTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAAGATTTGCATACAATTTTTTCACGCTTTGGAAATGTATCCTCGGCCGAAATCATCCGTGATCACAAGACTGGTGATAGTTTATGCTATGCTTTCATAGAGTTTGACGACATACAAGCATGTGAACAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAGTACAGACGGAAGGATCAAAAGGGTAAAGGTGGTGGTTGCTTTAAATGTGGTTCTACAAATCATATCGCCAAGGATTGCACTGGAGATGATACAATAAAACAACAACCTGCAAAATACATCTTGAAAGATGATAATACCCAACGTGGTGGACATAATGCAAGGTATGAAATGGTTTTTGATGAAGATAACACAGGAAGTCCTAGGCAACACATAAAACATCAAAAGCATGACAGAGATGACCAAATTGAAAGAAAAAGTAGGAAGGAAAATTTTAAAGATCCTGTTCGTGGTAGTAGTAGGGATCCAGAGATGGTGGTCTCAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGTCACGGGGGAAATCGAGATAATAAAGCACGATATGAAAGAGGTACAGGAGATTTGGATTCCTATGCTGATAGGAAAGACAGAGAAAAGCATATGGAAAGGCACATAGATGATGAATACAAGCGGAAAGATGAGCTAGACTCAAGAAAAAGAGACTTGGATGATAGATACATAGAAAGATGGGGCAGTGGTGATTATAGGAAAAAAACAGATTCTAGCCATTTGGTGGAAAGAAGGGATGGCAGAGATAACAGGAAGAGACCCGAAGACAGTGGACAGCAAGATATGAAGAGCGGTTCCAGACGAAGAAAACGAAGTCCAGACAAAGATCACAGACATAGAAGGGAGGATGAAGATCACAGACAAAAAAGGGAAGAACATGGACATGAACATGAACGTGGACATAGAAGACGAGATACTGAATCTGATGACTATCCTTATAGGAGGCATCATGGTGACAGAAGATAA 1806 0.4064 MSVLIVTSLGDLVVDLHTDKCPLTCKNFLKLCKIKYYNGSLFHSVQKDFTAQTGDPTATGTGGDSIYKFLYGDQARFFSDEIHLDLKHSKTGTFAMASAGENLNASQFYITLRDDLDYLDGKHTVFGELAEGLETLTRINEAYVDEKSRPYKNIRIKHTYILEDPYDDPPQLAEMIPDASPEGKPKDEVDDGVRLEDDWVPMDEQLDPAELEEVIRDKEAHSRAVILESVGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGNVSSAEIIRDHKTGDSLCYAFIEFDDIQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTNHIAKDCTGDDTIKQQPAKYILKDDNTQRGGHNARYEMVFDEDNTGSPRQHIKHQKHDRDDQIERKSRKENFKDPVRGSSRDPEMVVSNNRDRYGDRSRGHGGNRDNKARYERGTGDLDSYADRKDREKHMERHIDDEYKRKDELDSRKRDLDDRYIERWGSGDYRKKTDSSHLVERRDGRDNRKRPEDSGQQDMKSGSRRRKRSPDKDHRHRREDEDHRQKREEHGHEHERGHRRRDTESDDYPYRRHHGDRR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0637 601 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Lal1g0637 601 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Lal1g0637 601 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 495 IPR035542 -
Lal1g0637 601 SMART rrm1_1 244 317 IPR000504 GO:0003723
Lal1g0637 601 Gene3D - 1 172 IPR029000 -
Lal1g0637 601 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Lal1g0637 601 CDD cyclophilin_RRM 4 169 IPR035538 -
Lal1g0637 601 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Lal1g0637 601 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Lal1g0637 601 MobiDBLite consensus disorder prediction 556 601 - -
Lal1g0637 601 MobiDBLite consensus disorder prediction 388 601 - -
Lal1g0637 601 Gene3D - 229 384 IPR012677 -
Lal1g0637 601 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Lal1g0637 601 SUPERFAMILY RNA-binding domain, RBD 228 339 IPR035979 GO:0003676
Lal1g0637 601 MobiDBLite consensus disorder prediction 388 549 - -
Lal1g0637 601 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Lal1g0637 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Lal1g0637 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Lal1g0637 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Lal1g0637 601 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Lal1g0637 601 CDD RRM_PPIL4 240 322 - -
Lal1g0637 601 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0637 Lal-Chr1 4110033 4117506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0637 7 166 U-box Gene Family AT5G67530 41.250 1.18e-31 128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0637 1 4110033 4117506 Lal1g0637 1 4110033 4117506 ECH