Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0633 ATGGCCGTTGAGCCTCCCCATCCAAACCTCTTCTCTTCTCAACTCACACACAACGGAGAAATGATGATGAATCCTATGGATGCAAGCATCAACCTCTACCACAATAACTACTCCTCGCTCATTCCTCTATCGGGAACCACTACTGCCACTACGTCGGAGACTCTTCTCCACCCACCGCCACCGTATAACTCCATAATCGCCGATTCGTTTCCTCATCAGAAAACTATAACCGCTATGAAATCTGACGTCACCACTCTCTCTTATAACAACAACAACAACAACATTGTCCCTGTATCAAGAAAACGCTCCATAGATTCCATCCTTTACTCTCTCCCTTATCATAATAATCGTGCAATCAACTTATCATTTCTCAATGAAGACATGTCTTTCCAAATCCATCATCAACAACTCCACCTCGATAACCTCGTTTCTCAACATATGGAGAAGGTGAGAATGGAATTGGAAGAGAAGAGGAAGAGACAAGCGAGGATGTTAATGGAGGTTGTTGAACTTGGAATGATGAAGAAGCTAAAAACAAAAGAGGAAGAGATGGAGAAGATTGAGAAATTAAACTACGCTCTTGAAGAAAAGATTAAATCTCTATGTATCGAAAACCAGATATGGCGAGATTTGGCGCAAACAAACGAAGCAACTGTAAATGCTCTGCGAACAAATCTCATCCAAGTTCTGTCTCAGGCGAGGGACGACGACGGAGAACACGGCAGAACCAGGGTGGTAGCGGTTGTTGAAGAAGCGGAATCTCGGTGTGGAAGCAATGATGAAAATGAAGGGTGGCGTATGATAGGAGGAAGTGCGCAGGATAAGGAGATGGGAGAAGAATGTAGTGGAAATGGGAGATTGTGCAGGAAGTGTGGGAAAGATGAATCGTGTGTACTCATATTACCTTGCAGGCACTTGTGTCTTTGTAATGTTTGTGCCTCTACCCTTAACACTTGTCCTATATGTAATTCCTTCAAAAATGCTACCCTCCTTGTTAACCTTACCTAA 1008 0.4335 MAVEPPHPNLFSSQLTHNGEMMMNPMDASINLYHNNYSSLIPLSGTTTATTSETLLHPPPPYNSIIADSFPHQKTITAMKSDVTTLSYNNNNNNIVPVSRKRSIDSILYSLPYHNNRAINLSFLNEDMSFQIHHQQLHLDNLVSQHMEKVRMELEEKRKRQARMLMEVVELGMMKKLKTKEEEMEKIEKLNYALEEKIKSLCIENQIWRDLAQTNEATVNALRTNLIQVLSQARDDDGEHGRTRVVAVVEEAESRCGSNDENEGWRMIGGSAQDKEMGEECSGNGRLCRKCGKDESCVLILPCRHLCLCNVCASTLNTCPICNSFKNATLLVNLT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0633 335 Pfam Zinc finger, C3HC4 type (RING finger) 286 324 - -
Lal1g0633 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 331 IPR013083 -
Lal1g0633 335 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 334 IPR017066 -
Lal1g0633 335 ProSiteProfiles Zinc finger RING-type profile. 288 323 IPR001841 -
Lal1g0633 335 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 334 - -
Lal1g0633 335 Coils Coil 147 167 - -
Lal1g0633 335 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0633 Lal-Chr1 4087419 4088829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0633 273 324 Miscellaneous Gene Families AT4G39050 37.037 2.04e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0633 1 4087419 4088829 Lal1g0633 1 4087419 4088829 ECH
Lal1g0633 1 4087419 4088829 Lal2g0684 2 4170374 4171868 LSH
Lal1g0633 1 4087419 4088829 Lal9g0594 9 4000268 4001459 LSH
Lal1g1559 1 17947758 17950246 Lal1g0633 1 4087419 4088829 PCT
Lal1g0633 1 4087419 4088829 Lal1g1559 1 17947758 17950246 PCT