Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0621 ATGTCCCGGACAACACTCTATTCTGTCATGACTTGTTTTCCTTTATTATTCGGAAAGAAGGTGTCTTCTGTAGCTAGACGAGATCGAGACATAGATGAAGAACTTTCAGGCCTTCAAAATGTAAGGATCTTCACCTACAAAGAACTAAGAAATGCCTGTGATAATTTCAGTTCAGCCAATAAAATTGGCGAGGGTGGTTTTGGTTCTGTCTATAAGGGATTGTTGAGAGACGGAAAGGTTGCTGCTATAAAAGTTCTTTCCGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAGATTAATGTGATATCAGAAATAGAGCATGAAAATTTGGTTAAGTTGTATGGTTGTTGTGTGGAAGGAGATCAAAGAATATTAGTCTACAATTACCTTGAGAAAAATAGCCTTGCACAAACCCTTCTAGGTGGAGGTTACAGTGATATTCAATTCAATTGGAGAACGCGAAGAAGGATATGCATTGGGGTTGCACGTGGTCTTGCCTTTCTTCATGAGGAAGTAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAATATTCTTCTTGACAAAGACCTTATACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCGTCACACTTGACTCATGTCAGCACACGAGTAGCAGGAACAATAGGTTATTTGGCACCAGAATATGCGATAAGGGGGCAATTGACACGGAAAGCAGATATTTACAGTTTCGGCGTCCTCCTTGTGGAGATAGCATGGGAGCTTTATGAGCAAGGGGAATTGGTAGGGCTGGTAGACATATCACTAAACGGCTTCTTCGATGCCGAAGAAGCTTGTAGAATTCTGAAGATTGCCCTTCTTTGCACTCAAGATAATCCAAAACTCAGGCCATCCATGCCTTGTGTGGTTAAGATGGTCATTGGAGAAATTGATGTTGGTGAAAGTAAGATAACAAAACCAAGTTTGATATCAGATATTATGAACCTCAAAGTCAAAGAACAAAAAGGTATTGATGATATGAAGATTTCATCTTCATACAGTGCATCCTCTGCCTCAGACAGCCAAGGTAATAATACTATGTCATTTGCTGCTTCAAGTGCTGCAAATACAACCTTCACTGTACAATATGATTAA 1134 0.3977 MSRTTLYSVMTCFPLLFGKKVSSVARRDRDIDEELSGLQNVRIFTYKELRNACDNFSSANKIGEGGFGSVYKGLLRDGKVAAIKVLSAESRQGVREFLTEINVISEIEHENLVKLYGCCVEGDQRILVYNYLEKNSLAQTLLGGGYSDIQFNWRTRRRICIGVARGLAFLHEEVRPHIVHRDIKASNILLDKDLIPKISDFGLAKLIPSHLTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIAWELYEQGELVGLVDISLNGFFDAEEACRILKIALLCTQDNPKLRPSMPCVVKMVIGEIDVGESKITKPSLISDIMNLKVKEQKGIDDMKISSSYSASSASDSQGNNTMSFAASSAANTTFTVQYD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0621 377 Gene3D Transferase(Phosphotransferase) domain 1 132 317 - -
Lal1g0621 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 251 - -
Lal1g0621 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 252 363 - -
Lal1g0621 377 SUPERFAMILY Protein kinase-like (PK-like) 32 306 IPR011009 -
Lal1g0621 377 Pfam Protein kinase domain 58 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0621 377 SMART serkin_6 56 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0621 377 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Lal1g0621 377 ProSiteProfiles Protein kinase domain profile. 56 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal1g0621 377 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 252 363 - -
Lal1g0621 377 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 11 251 - -
Lal1g0621 377 Gene3D Phosphorylase Kinase; domain 1 26 131 - -
Lal1g0621 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0621 Lal-Chr1 3957755 3962590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0621 26 358 Receptor kinase-like Gene Family AT1G07650 50.000 1.09e-104 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal1g0621 Pkinase 1.5e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0621 1 3957755 3962590 Lal1g0621 1 3957755 3962590 ECH