Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0587 ATGAATGAACAAAGAACCGCATTGCATCAAAAAATCACTGATAAAAAAACTCAGCAGACGAAGCGTCACTATCACAGTCCCAGTTCCTTAGGCTTAGGGTTCCTCTGTTCTTCTTACCAAAACTTTCACATTTTCAACATCAACCGTTTTTTTCTCTATCATATGGCGAAAACAAGGCCAGGTAGAAAGGACGTGGATTCCTACACCATCAAAGGCACCAACAAGACTGTAAGAGCTGGAGATTGTGTTTTGATGCGGCCTTTGGACACAACAAAGCCACCGTATGTGGCGCGCGTGGAGAAGATCGATGAAGACAACAGGAGCAACATTAAGGTGCGCGTGAGATGGTACTATAGACCTGAAGAGTCAATAGGGGGTAGAAGACAGTTCCATGGAGCAAAAGAGCTTTTTTTATCTGACCATTATGATGTTCAGAGTGCTCACACTATTGAAGGAAAGTGTATTGTTCACTCTTTCAAGAACTACACTAAGCTTGAGAATGTAGCTGCTGAGGATTACTATTGTAGATTTGAGTATAAGGCTGCAACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAGGGGTGCAAGGATTGGTACCATCCTGCGTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGAACATTTTGTATGCTCAGAATGTTCATCTGATGATGATTTGAAGAAACCGCAAGCTACATTCTCTGCATCACCAGGAGCTGATGGCAAGGTAGAGCCCAAGCGACGAAAGAGAGGACCGTGA 819 0.4383 MNEQRTALHQKITDKKTQQTKRHYHSPSSLGLGFLCSSYQNFHIFNINRFFLYHMAKTRPGRKDVDSYTIKGTNKTVRAGDCVLMRPLDTTKPPYVARVEKIDEDNRSNIKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVAAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLEHFVCSECSSDDDLKKPQATFSASPGADGKVEPKRRKRGP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0587 272 MobiDBLite consensus disorder prediction 241 272 - -
Lal1g0587 272 PANTHER BNAC03G64850D PROTEIN 56 267 IPR045205 GO:0006325|GO:0035064
Lal1g0587 272 Pfam PHD-finger 194 242 IPR019787 -
Lal1g0587 272 PANTHER OS08G0421900 PROTEIN 56 267 - -
Lal1g0587 272 ProSiteProfiles BAH domain profile. 75 190 IPR001025 GO:0003682
Lal1g0587 272 MobiDBLite consensus disorder prediction 1 24 - -
Lal1g0587 272 ProSiteProfiles Zinc finger PHD-type profile. 192 243 IPR019787 -
Lal1g0587 272 SMART BAH_4 75 190 IPR001025 GO:0003682
Lal1g0587 272 SUPERFAMILY FYVE/PHD zinc finger 186 243 IPR011011 -
Lal1g0587 272 ProSitePatterns Zinc finger PHD-type signature. 195 240 IPR019786 -
Lal1g0587 272 Gene3D - 52 186 IPR043151 -
Lal1g0587 272 CDD BAH_BAHCC1 76 210 - -
Lal1g0587 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 255 IPR013083 -
Lal1g0587 272 SMART PHD_3 194 241 IPR001965 -
Lal1g0587 272 Pfam BAH domain 76 189 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0587 Lal-Chr1 3761172 3764211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0587 95 192 Core DNA Replication Machinery Family AT4G14700 29.293 1.65e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal1g0587 BAH 3.3e-23 No_clan