Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0363 ATGGATCATTCTTCTACTGTACAACACCAGCAAATGTGTAACCAGTCACTAGAAAACATGATAGCTTGTTCAAAATCAGCACAACATGACAAGAAACCAAAACCTCAGCCAGAAGAAGCTTTAAAATGCCCAAGATGTGATTCAGCCAACACCAAATTCTGTTACTACAACAACTACAGTCTTTCTCAGCCAAGGTATTTCTGCAAGTCTTGTAGGAGATATTGGACAAAAGGAGGAACTCTAAGGAATGTTCCAGTTGGTGGAGGATGCAGGAAAAACAAGAGATCATCTTCATCAAAGAGATCTCAAGATCAAACATTTACACCAAATCCAAACTCTCTTATTGGTCTCACACCAATGGCTTATGACTCAAGTGACCTTAACCTTGCTTTAGCTAGACTTCAAAAGGGGTCAATGGGTTATGATGATCATGATCTTTCAATCATGGGGAACCACACAAACACAAACACACCATGTGATAATAACATTCTTGGAAATTTATGCATGAATCCTTCAAACCCTGGATTCTTAGATGCTCTTAGAAGTGGGTTCCTTGGAACTCATAACAATAACAATAGTATGCAAAATATGTACTATGGTTATGGGAATGGTGAGAATATGGGTGAGGTGGAAAATGGAAACAATGGTTGTGGAGAGATGATGATGCCTTATGATCATCAACAACAAATGAGTACTATTGCTACTACTCAAGCAGTGTCTGTCACTACCATGAAGCAGGAACTGTGCAATGCAAGGGAACAAAGTGAAAACAAGGTTTTGTGGGGTTTCCCTTGGCAACAAAATGGAGTAGACACAAACATGGGTGAAGCAATTGATTCAGGAAGAGGAAATTGGAACAATGGTTTCACTTCATCATGGCATGGACTTCTCAATAGTCCCTTAATGTAG 909 0.3938 MDHSSTVQHQQMCNQSLENMIACSKSAQHDKKPKPQPEEALKCPRCDSANTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSKRSQDQTFTPNPNSLIGLTPMAYDSSDLNLALARLQKGSMGYDDHDLSIMGNHTNTNTPCDNNILGNLCMNPSNPGFLDALRSGFLGTHNNNNSMQNMYYGYGNGENMGEVENGNNGCGEMMMPYDHQQQMSTIATTQAVSVTTMKQELCNAREQSENKVLWGFPWQQNGVDTNMGEAIDSGRGNWNNGFTSSWHGLLNSPLM 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0363 302 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Lal1g0363 302 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 8 301 - -
Lal1g0363 302 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Lal1g0363 302 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Lal1g0363 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 8 301 IPR045174 GO:0003700|GO:0006355
Lal1g0363 302 MobiDBLite consensus disorder prediction 86 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0363 Lal-Chr1 2195827 2197520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0363 39 302 C2C2-Dof Transcription Factor Family AT2G28510 45.172 1.58e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal1g0363 zf-Dof 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0363 - - lang:109353359 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0363 1 2195827 2197520 Lal1g0363 1 2195827 2197520 ECH
Lal1g0363 1 2195827 2197520 Lal9g0256 9 1598390 1600856 LSH
Lal10g1244 10 18710020 18711582 Lal1g0363 1 2195827 2197520 PCT
Lal1g0363 1 2195827 2197520 Lal10g1244 10 18710020 18711582 PCT