Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1434 ATGGGAGGAGGTAGATTTTTCGGCGGCGGCGGAAACGGTGGTGGTGGTGGTGGTGGTGGTGGAGGGGACAGGAGGCTGAGACCCCACCACCACCTTCAGGCCTTGAAGTGCCCCCGCTGTGATTCTATCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGTCATTTCTGCAAGAACTGCCGTCGTTACTGGACTAAAGGCGGCGTCCTCCGTAACGTCCCCGTTGGCGGTGGATGCCGCAAATCCAAACGCGGCAACAACAACAACAACAGCATCACCAAATCCCCAAAGAACAACTCCTCATCTGAAACCCCACCGGAACATAACTCCAATTCTCATTCCAGCAGTGAAAGTTCCAGCCTCACCGCCACCACCGAAGCCGTTTCAGCTCCCAACAACTCTGATTCAAACTTGTTGATCCCTTCCTCAATCCCTCCATTGGAGACAGGCACACTTGAACAACAAGGAACAGGGGATTGTGCTATTTTCTCAGATATTGGAAGCTTCACAAGCTTGATCACTTCCACCAACGACACATTGCAATTTGGATTTGGTGCTAACACTCTCCCTGATACGTCGTCGTTTCAGTGGCAGCACCAAAAGGGGTTAACCATGGGTAGTGCTGATGATGTGGAATTGAAGTTTCAGGATAATCTCAACGGTGGTGGTTCTTCCTCGTTGCTTGATCAAGGTACCGTACCCATTCATTTATCAGTGCTGCAAAACAAAACAGGGCATGGAGGATTTGGATCGTTGGATTGGAATGGAGGTGTAGATCATGGTTTGTTTGATCTTTCTAACACCGTTGATCATAATTACTGGACTCCACACACCACCCACTGGTCTGATCATGACAATTCTACTCTCTTTCATCTTCCTTGA 897 0.4916 MGGGRFFGGGGNGGGGGGGGGGDRRLRPHHHLQALKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRGNNNNNSITKSPKNNSSSETPPEHNSNSHSSSESSSLTATTEAVSAPNNSDSNLLIPSSIPPLETGTLEQQGTGDCAIFSDIGSFTSLITSTNDTLQFGFGANTLPDTSSFQWQHQKGLTMGSADDVELKFQDNLNGGGSSSLLDQGTVPIHLSVLQNKTGHGGFGSLDWNGGVDHGLFDLSNTVDHNYWTPHTTHWSDHDNSTLFHLP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1434 298 MobiDBLite consensus disorder prediction 87 158 - -
Lal19g1434 298 PANTHER DOF ZINC FINGER PROTEIN 4 17 279 - -
Lal19g1434 298 Pfam Dof domain, zinc finger 34 89 IPR003851 GO:0003677|GO:0006355
Lal19g1434 298 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 279 IPR045174 GO:0003700|GO:0006355
Lal19g1434 298 MobiDBLite consensus disorder prediction 1 27 - -
Lal19g1434 298 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Lal19g1434 298 MobiDBLite consensus disorder prediction 80 158 - -
Lal19g1434 298 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1434 Lal-Chr19 17002931 17003827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1434 23 298 C2C2-Dof Transcription Factor Family AT5G60850 39.610 7.77e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal19g1434 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1434 - - gmx:100800458 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1434 19 17002931 17003827 Lal19g1434 19 17002931 17003827 ECH
Lal14g1877 14 18240598 18241494 Lal19g1434 19 17002931 17003827 LSH
Lal7g1335 7 18571094 18571987 Lal19g1434 19 17002931 17003827 LSH