Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1079 ATGGGTTTATCCTCTCTCCACATCTGCATGGATTCATCAGATCATTGGTTTCAGGGCACAGTTGAGGAGGTGTCCATGATAGATTCATCTTCAATTTCATCACCATCTGCAGCAGACATGCTTACATGTTCAAAGCCCATGATAGATCAGAGGAATCTAAGACCCCCACAAGACCAAGCACTCAAATGCCCAAGGTGTGATTCAACTCACACCAAGTTCTGCTACTACAACAACTACAGCCTCACCCAGCCTAGGTACTTCTGCAAGACTTGTAAAAGGTACTGGACAAAAGGAGGCACTCTTAGGAACATCCCTGTTGGTGGTGGTTGTAGAAAAAACAAGAAAGTTTCTAATTCCAAGAACCCTAATAATAATGACCAATCACCTATTATTACTCAAAACCAAGCACAGCCAGGACTTGTTGTATCTAATTCTTACCATCACTACCCCAAAGATATTCAAGTTCCTTTCCAAGCTGATGTGCAATTTTCCCACCTCAACAATTTGCTTGGGGTTAGTGCTGGGGCACTTGGAAGCCCTAATTTTATGGAGAACCACCCTAGGGCTAATATTTCTAGGAATTTTGATTTTTTTGGAAATAGTGATATGGGTGTTGGATATGGAGATAATGTGAATGGTTACAATAATGGGTTGTTACCTTCAAATTATCAAGCTCATTGCTTTGGGGGTATGTCCCTTGATCATGGGAACAATGGTGGGAATTATAACCTAATCGACATGTATCAGCGATTGATATTGCCTTATGATACAAGTGATCATAGCCAAAATGGTTCAATTGATGATGTGAAGCCAGACCCTAAGCTATTGTCCCTTGAATGGCAAAACCAGGTTTACTCAGATCCTGAATATACTAATGGTTCAGGATCATGGAGTGGCATGATGAACTGCTATGGATCTTCCACAACGAACCCTTTGATCTAG 942 0.413 MGLSSLHICMDSSDHWFQGTVEEVSMIDSSSISSPSAADMLTCSKPMIDQRNLRPPQDQALKCPRCDSTHTKFCYYNNYSLTQPRYFCKTCKRYWTKGGTLRNIPVGGGCRKNKKVSNSKNPNNNDQSPIITQNQAQPGLVVSNSYHHYPKDIQVPFQADVQFSHLNNLLGVSAGALGSPNFMENHPRANISRNFDFFGNSDMGVGYGDNVNGYNNGLLPSNYQAHCFGGMSLDHGNNGGNYNLIDMYQRLILPYDTSDHSQNGSIDDVKPDPKLLSLEWQNQVYSDPEYTNGSGSWSGMMNCYGSSTTNPLI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1079 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 305 IPR045174 GO:0003700|GO:0006355
Lal19g1079 313 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Lal19g1079 313 MobiDBLite consensus disorder prediction 114 133 - -
Lal19g1079 313 Pfam Dof domain, zinc finger 58 115 IPR003851 GO:0003677|GO:0006355
Lal19g1079 313 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Lal19g1079 313 MobiDBLite consensus disorder prediction 107 133 - -
Lal19g1079 313 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 21 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1079 Lal-Chr19 14501402 14503366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1079 1 313 C2C2-Dof Transcription Factor Family AT5G62940 39.426 4.68e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal19g1079 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1079 - - lang:109363070 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1518 14 16002580 16004399 Lal19g1079 19 14501402 14503366 LSH
Lal19g1079 19 14501402 14503366 Lal4g1129 4 14702982 14705378 PCT
Lal4g1129 4 14702982 14705378 Lal19g1079 19 14501402 14503366 PCT