Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0997 ATGGAAAGAGGTGATGAAGAAAAGGTGCAGATATTCCAAGATTACTCTAATCGGTCACAGAAAGACATGTCAGCCATGGTCTCAGCACTTGTTCAAGTCATTGGTGGCACTCCTTCGGTGCATGATAAAGATTCATTACCATCATCCATCCATTCAAATATTGCACCACAGATTCAACAATCCCAACCATCTCAACATCAAGGGAACATAAGAAGAAGACAGTATAGGGGAGTGAGACACAGACCTTGGGGGAAATGGGCAGCAGAAATTCGCAATCCAAAGAAGGCAGTGAGGGTTTGGCTTGGAACTTTTGAAACAGCTGAAGCTGCTGCTCTTGCATATGATCAAGCTGCTTTCACTTTCAAAGGTTCCAAAGCTAAGCTCAATTTCCCTGAAAGGGTTCCTATTACTAACACTCAATTTCTGTCAACCACTGAAATTTTTTACTCTCCTCCTCCAAATTATTCAACTCCTTCACAACTTCATGCAGCTTCCTCTTCTTGTTCATCATCATCTTCTGGACTTGTATCTCAACAAAAACAAGAAGAGTTTGTTCAATTTTCGATGCAATTTGGAGCTTCTTCTTCTTCTTCTACTTCTGAGCCTGCTAGGAAGAGTGACTTGGATGATACACTTTGA 639 0.4131 MERGDEEKVQIFQDYSNRSQKDMSAMVSALVQVIGGTPSVHDKDSLPSSIHSNIAPQIQQSQPSQHQGNIRRRQYRGVRHRPWGKWAAEIRNPKKAVRVWLGTFETAEAAALAYDQAAFTFKGSKAKLNFPERVPITNTQFLSTTEIFYSPPPNYSTPSQLHAASSSCSSSSSGLVSQQKQEEFVQFSMQFGASSSSSTSEPARKSDLDDTL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0997 212 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Lal19g0997 212 PANTHER DNA-BINDING DOMAIN 10 169 IPR044808 GO:0003700|GO:0009873
Lal19g0997 212 MobiDBLite consensus disorder prediction 56 71 - -
Lal19g0997 212 MobiDBLite consensus disorder prediction 191 212 - -
Lal19g0997 212 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Lal19g0997 212 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Lal19g0997 212 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Lal19g0997 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10 169 - -
Lal19g0997 212 CDD AP2 74 132 IPR001471 GO:0003700|GO:0006355
Lal19g0997 212 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700|GO:0006355
Lal19g0997 212 MobiDBLite consensus disorder prediction 56 76 - -
Lal19g0997 212 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Lal19g0997 212 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0997 Lal-Chr19 13842021 13843395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0997 11 166 AP2-EREBP Transcription Factor Family AT5G61890 56.627 3.69e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal19g0997 AP2 2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1301 12 15962022 15964578 Lal19g0997 19 13842021 13843395 ECH
Lal6g1644 6 19205330 19207783 Lal19g0997 19 13842021 13843395 ECH
Lal19g0997 19 13842021 13843395 Lal19g0997 19 13842021 13843395 ECH
Lal19g0997 19 13842021 13843395 Lal21g0694 21 5496544 5497748 PCT
Lal19g0997 19 13842021 13843395 Lal4g0680 4 5321613 5323687 PCT
Lal21g0694 21 5496544 5497748 Lal19g0997 19 13842021 13843395 PCT
Lal4g0680 4 5321613 5323687 Lal19g0997 19 13842021 13843395 PCT