Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1318 ATGTTAACTCAACAACAACATAACCAAAACCACCAGTCCAAGTCAACTTCCCTTGCTTCACAATTGTATATATCTACCCCCATTGTTATACCTTATACCAGCAGGGCTTCACAATCTCTCTTTGTCTCTTTTACCCACACATTGTTTTTAGCAATGAGAAAACCTCATTGTTACAAAGAAAGCACCAACAAAGGTGCTTGGTCCAAGCAAGAGGACCAAAAGCTTATTGATTATATCCAGGTTCATGGTGAAGGTTGTTGGAGTTCAATTCCCAAGGCTGCTGGTTTGTATCGTTGTGGGAAAAGCTGTAGGTTAAGATGGTTAAACTTCTTAAGACCAGACATAAAACATGGAGTGTTTGGTCAAGATGAAGAAGATCTCATCATTAAACTTCATGCCCTCCTTGGCAACCGGTGGTCACTCATAGCCGGAAGGTTACCAGGACGTACTGACAATGAGGTCAAGAACTATTGGAATTCTCACATCAGAAGAAAGCTAATAAATATGGGAATTGATCCAAATAATCACAAGCTACATGTTCATCACCCAGATCCTGCTGCTTCTAGTGCTTCATCATCTGTGTCTATGAAAATTGACCATAGAGTCTATCCTTATTTCAAATCCTATGATGCTGCCAATGAAGTTTTATTCTCTAAATGTTGTCATGAAGAAGAAACGACAATGGTTTCATCATCCAACTTAAATCTTGACCTAACCATTGCTTTACCTTCACCTAGGCTTGATATTGTGGAGGACAAACCTAAACCAAATTCTGAGTCCAGGACTAAGAGAAGGGAGGACATGCATGGTTATGAATCTTAA 822 0.3954 MLTQQQHNQNHQSKSTSLASQLYISTPIVIPYTSRASQSLFVSFTHTLFLAMRKPHCYKESTNKGAWSKQEDQKLIDYIQVHGEGCWSSIPKAAGLYRCGKSCRLRWLNFLRPDIKHGVFGQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLINMGIDPNNHKLHVHHPDPAASSASSSVSMKIDHRVYPYFKSYDAANEVLFSKCCHEEETTMVSSSNLNLDLTIALPSPRLDIVEDKPKPNSESRTKRREDMHGYES 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1318 273 SUPERFAMILY Homeodomain-like 62 158 IPR009057 -
Lal18g1318 273 MobiDBLite consensus disorder prediction 248 273 - -
Lal18g1318 273 Gene3D - 119 187 - -
Lal18g1318 273 Pfam Myb-like DNA-binding domain 64 111 IPR001005 -
Lal18g1318 273 Pfam Myb-like DNA-binding domain 118 161 IPR001005 -
Lal18g1318 273 ProSiteProfiles Myb-like domain profile. 59 111 IPR001005 -
Lal18g1318 273 CDD SANT 66 111 IPR001005 -
Lal18g1318 273 CDD SANT 122 162 IPR001005 -
Lal18g1318 273 PANTHER MYB TRANSCRIPTION FACTOR 53 261 - -
Lal18g1318 273 MobiDBLite consensus disorder prediction 247 273 - -
Lal18g1318 273 ProSiteProfiles Myb-like domain profile. 112 162 IPR001005 -
Lal18g1318 273 Gene3D - 64 116 - -
Lal18g1318 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 53 261 - -
Lal18g1318 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 166 IPR017930 -
Lal18g1318 273 SMART sant 116 164 IPR001005 -
Lal18g1318 273 SMART sant 63 113 IPR001005 -
Lal18g1318 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 111 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1318 Lal-Chr18 15665318 15667057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1318 53 177 MYB Transcription Factor Family AT4G38620 72.800 5.66e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal18g1318 Myb_DNA-binding 1.3e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1318 18 15665318 15667057 Lal18g1318 18 15665318 15667057 ECH
Lal23g0871 23 11048900 11051785 Lal18g1318 18 15665318 15667057 ECH