Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1044 ATGGAGGTTGGGCCCGTGAGACTCATCATGGATTCAAGTTCAAGGCCTTTTATAGAGAAGAAAGCTCCTAGGCCACCACAAGAACCAGCAAATTGTCCAAGGTGCAGTTCAACCAATACCAAGTTCTGTTACTACAACAACTATAGCCTCACACAACCAAGATACTTCTGCAAGACATGTAGAAGGTATTGGACAGAAGGTGGGTCTCTCAGAAATGTTCCTGTTGGAGGTGGTTCTAGAAAGAACAAGAAAGTTACCACAACCTCACCCTCAACCTCAACCTCAACCTCAGCAACATCAAAGGTTATTCCAGACCTAAACCCACCAAGCCTCTCAATATCATCATCATCAGCTATAATTTCTAACTCTCAAAACCCTAAAATAATGCAAGGATCAGGCCATGATCTTAACCTTGCTTTCCCTTCTATGGATCACAATTACCATGGCATCTCCTCATATGTTGACATGGTTAATGGTGACACTAGTCATCACCAAAACTCTTCTTCTGGTCCAACTTCTCTTTCTGCTTTGGAACTGTTAAGGTCTGGCATGGCTTCTAGGGGTTTGAATCCTTATGCTCCTAATTCCTTGATGCCAAACTCAAGTTCTCTTTACCCTTCTGGGTTCCCCATGCAAGAAGTTAAAGCAAATCTTGGTTTCTCAGTTGATCATGGAGTTGGAAATAGATCATATCACGATCAGGTCCAAGAGAATGATGGCACACTTTTGTTCCCTTTTGGAAATGTCAAGCAACAGCTTTCTCATGCTGGTAGTGCTGAAGTTGAACATAATAATAAGGAACAAGGAAATTCAGCAAGTACTGGATATTGGAGTGGAATGATTGGTGAAGGGTCATGGTAG 861 0.4228 MEVGPVRLIMDSSSRPFIEKKAPRPPQEPANCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTTTSPSTSTSTSATSKVIPDLNPPSLSISSSSAIISNSQNPKIMQGSGHDLNLAFPSMDHNYHGISSYVDMVNGDTSHHQNSSSGPTSLSALELLRSGMASRGLNPYAPNSLMPNSSSLYPSGFPMQEVKANLGFSVDHGVGNRSYHDQVQENDGTLLFPFGNVKQQLSHAGSAEVEHNNKEQGNSASTGYWSGMIGEGSW 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1044 286 MobiDBLite consensus disorder prediction 255 286 - -
Lal18g1044 286 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Lal18g1044 286 MobiDBLite consensus disorder prediction 71 107 - -
Lal18g1044 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 19 281 - -
Lal18g1044 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 281 IPR045174 GO:0003700|GO:0006355
Lal18g1044 286 MobiDBLite consensus disorder prediction 81 107 - -
Lal18g1044 286 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Lal18g1044 286 MobiDBLite consensus disorder prediction 12 31 - -
Lal18g1044 286 MobiDBLite consensus disorder prediction 255 280 - -
Lal18g1044 286 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1044 Lal-Chr18 13449850 13451997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1044 18 286 C2C2-Dof Transcription Factor Family AT3G61850 46.075 5.17e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal18g1044 zf-Dof 9.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g1044 - - gmx:778110 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1044 18 13449850 13451997 Lal17g0583 17 4163760 4166730 ECH
Lal18g1044 18 13449850 13451997 Lal4g0508 4 3683890 3685172 ECH
Lal18g1044 18 13449850 13451997 Lal21g0577 21 4294142 4296451 ECH
Lal18g1044 18 13449850 13451997 Lal18g1044 18 13449850 13451997 ECH
Lal5g0049 5 538478 539173 Lal18g1044 18 13449850 13451997 ECH
Lal22g0568 22 3873537 3874364 Lal18g1044 18 13449850 13451997 LSH