Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g1038 ATGGAAGTGAAACGAAAACATTCTTTCCTTTTCTCCTTATTAACCATATTCCTCTCTATCTCCACCGCTTCTTCTTCCTTCCAAACCCAATCTCTAACCCTACACTCACTCCCCAACCCACCCACCCTATCACTACCCGAACCCGATTCCATTGAACCCGACCCGGATTCCTCAACCACCCTCTCTCTCGACCTCCACCACATTGACGCACTCTCCTTCAACATAACCCCACTCAACCTCTTCATTCTCAGGCTCCAACGTGATGCTTCAAGAGTCATTTCCTTCTCTTCCATTCTCTCAAAAGCAACTTCCCAAAACCAAACCAAACCCACCGGGTCGGGTTTCAGCAGTTCTGTTTCTTCCGGTTTATCCCTAGGAAGCGGTGAATACTTCACGCGCCTCGGTGTAGGAACTCCTCCTAAGTATCTCTACATGGTTCTTGACACAGGAAGCGACGTCGTTTGGCTCCAATGCAAACCATGCAGGAGATGTTACTCTCAATCCGACCCGATTTTTGACCCGGCCCGATCAACCTCCTTCGCCGGAATCCCTTGCGGTTCCCCTCTCTGCCGCCGGTTGGACTCTCCGGGATGCAACCAGAAGAAGGTTTGCCAGTACCAAGTGTCTTACGGCGACGGTTCTTTCACGTTTGGTGACTTTTCCAACGAAACGCTGACGTTTCGACGCACCGGTGTGGCGCGTGTGGCTATCGGTTGCGGCCATGATAATGAAGGCTTATTTGTTGGTGCCGCCGGTTTATTAGGTCTCGGAAGGGGAACTCTTTCTTTTCCTTCTCAAACCGGAACCCGGTTTAATAAGAAATTCTCTTACTGTTTAGTGGACCGGTCTAGTTCAACTAAACCGTCTTCTATGGTTTTTGGCGATTCAGCTGTTTCACGAACCGCCCGGTTCACTCCGTTAATAAAAAACCCTAAACTAGATACCTTCTATTACGTGGAGCTTCTTGGGATAAGTGTGGGTGGGGCTCCGGTTCGCGGAATTTCAGCTTCTTTATTCCGGCTCGACCAGACCGGTAACGGTGGTGTAATTATTGACTCGGGTACTTCAGTAACTCGGCTCACAAGACCAGCTTACGTTGCATTAAGAGACGCTTTTCGGGTCGGGGCGACCCGTTTGAAACGGGCACCCGAATTCTCACTCTTTGATACTTGTTATGATCTTTCGGGGCTGACGGAGGTGAAGGTTCCGACTGTAGTGTTTCACTTCCGCGGTGCTGATGTGTCATTGCCTGCGGCGAATTACTTGATTCCGGTGGATAACAGCGGTAGCTTCTGCTTCGCGTTCGCCGGAACGATGAGTGGGTTGTCCATTATCGGCAATATCCAGCAGCAAGGGTTCCGGGTCGTGTATGACTTGGCGGGTTCGCGGGTCGGGTTTTCTCCCAGAGGTTGCTAA 1416 0.5071 MEVKRKHSFLFSLLTIFLSISTASSSFQTQSLTLHSLPNPPTLSLPEPDSIEPDPDSSTTLSLDLHHIDALSFNITPLNLFILRLQRDASRVISFSSILSKATSQNQTKPTGSGFSSSVSSGLSLGSGEYFTRLGVGTPPKYLYMVLDTGSDVVWLQCKPCRRCYSQSDPIFDPARSTSFAGIPCGSPLCRRLDSPGCNQKKVCQYQVSYGDGSFTFGDFSNETLTFRRTGVARVAIGCGHDNEGLFVGAAGLLGLGRGTLSFPSQTGTRFNKKFSYCLVDRSSSTKPSSMVFGDSAVSRTARFTPLIKNPKLDTFYYVELLGISVGGAPVRGISASLFRLDQTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVGATRLKRAPEFSLFDTCYDLSGLTEVKVPTVVFHFRGADVSLPAANYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLAGSRVGFSPRGC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g1038 471 PANTHER ASPARTYL PROTEASES 17 471 IPR001461 GO:0004190|GO:0006508
Lal18g1038 471 CDD cnd41_like 129 471 IPR033873 -
Lal18g1038 471 Gene3D Acid Proteases 292 471 IPR021109 -
Lal18g1038 471 PRINTS Pepsin (A1) aspartic protease family signature 136 156 IPR001461 GO:0004190|GO:0006508
Lal18g1038 471 PRINTS Pepsin (A1) aspartic protease family signature 349 360 IPR001461 GO:0004190|GO:0006508
Lal18g1038 471 PRINTS Pepsin (A1) aspartic protease family signature 443 458 IPR001461 GO:0004190|GO:0006508
Lal18g1038 471 Pfam Xylanase inhibitor N-terminal 130 295 IPR032861 -
Lal18g1038 471 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 17 471 - -
Lal18g1038 471 SUPERFAMILY Acid proteases 123 471 IPR021109 -
Lal18g1038 471 ProSiteProfiles Peptidase family A1 domain profile. 130 467 IPR033121 -
Lal18g1038 471 Pfam Xylanase inhibitor C-terminal 317 467 IPR032799 -
Lal18g1038 471 MobiDBLite consensus disorder prediction 38 58 - -
Lal18g1038 471 Gene3D Acid Proteases 102 291 IPR021109 -
Lal18g1038 471 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 349 360 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g1038 Lal-Chr18 13362256 13363671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g1038 128 471 Miscellaneous Gene Families AT1G77480 28.042 4.61e-28 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g1038 18 13362256 13363671 Lal18g1038 18 13362256 13363671 ECH
Lal6g0714 6 4715713 4717041 Lal18g1038 18 13362256 13363671 LSH
Lal5g0047 5 526219 528516 Lal18g1038 18 13362256 13363671 PCT
Lal18g1038 18 13362256 13363671 Lal5g0047 5 526219 528516 PCT